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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G129000.1.p | ||||||||
Common Name | SETIT_019812mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 34634.5 Da PI: 4.7255 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.6 | 1.2e-19 | 12 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 ppG+ F+P d+elv ++L ++++g++ ++ vi++ ++ Pw+L k++ ++ + yfF++++++ a r+ r +g+W ++ + Seita.1G129000.1.p 12 PPGVNFRPDDDELVEFFLLPRLRGEPswFPGVVVIDDDSAANTLPWNLLKRHGLvDDGNAYFFVHTNNEVA---RQDRyCPGDGTWVSQRQ 99 8*************************776665679999**********754433266699*****999876...77775778*****9988 PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +++ ++ ++ L + gr +kg + Wvmhey+l Seita.1G129000.1.p 100 ESGSSCIcGETIKWRRTNLNLQMGRGKKG-SMGWVMHEYTL 139 766555526666778889*********98.899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-25 | 4 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.972 | 11 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-14 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MSTKAAQILG HPPGVNFRPD DDELVEFFLL PRLRGEPSWF PGVVVIDDDS AANTLPWNLL 60 KRHGLVDDGN AYFFVHTNNE VARQDRYCPG DGTWVSQRQE SGSSCICGET IKWRRTNLNL 120 QMGRGKKGSM GWVMHEYTLT EPPCPFLKIC HVTFTGHGKW RKRVPDDESD CQATGEPASK 180 RPRVAVTAAA VDTSVPAIFQ QEHSLPFPID QGISAMTHQQ QMVMMPMPDD KNDCQAANSS 240 SATCANGSTM TTADQDSGAA HAYAGEESAQ DTDEETLEWF RLDGKDLLAD AEPTAEQQTR 300 TSYNREEQLR LL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G129000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954806.1 | 8e-62 | NAC domain-containing protein 48 | ||||
TrEMBL | A0A368PK32 | 0.0 | A0A368PK32_SETIT; Uncharacterized protein | ||||
STRING | Si019812m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8717 | 9 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 7e-09 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G129000.1.p |