PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G091900.3.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 486aa    MW: 51928 Da    PI: 9.7041
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G091900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.46.2e-41189265278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+
  Seita.1G091900.3.p 189 CQVEGCKIDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLDVFDQKKRSCRRRLNDHNARRRKPQP 265
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.0E-33182250IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.761186263IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-38188268IPR004333Transcription factor, SBP-box
PfamPF031102.0E-31189262IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MMDDPSTRRT AGIFGSGMGS FGMDWSQKGS VLWDWENLPP IGANGNLVPQ AEAKFAGVEI  60
TRHGSVHSSC GTFSSSSEMG YGSSKSSISA SIDSSPKAGN NMELNFAPAR VPDKYIRKNT  120
DLRTSPSSVI AVSSGEPVLS LKLGKRTYFE DACGGQSVKS SPSDSSIVTP PAAPVKKAKA  180
AQNVQNSYCQ VEGCKIDLSS AKDYHRKHKV CEAHSKAPKV VVAGLERRFC QQCSRFHGLD  240
VFDQKKRSCR RRLNDHNARR RKPQPEAISF GSSRLPAMFY GTDPRQQTSL LFGQAPYGQI  300
RSRASSSWDN PGGAFKFAET KASWLKPAGA TGLDALHLSS QQVWNNIMPH GAHQDFAGFM  360
AFKGTSAKVL NQGVEASVVA SDSNGNPDLQ RALSLLSNNS ADAGNNQPTT QLHPGLSALA  420
STSNAVMQQA SPPGLWQDGT ALDLHARFQA LDPMGNGSAI AAAHELQLPR PPSYNGSSSH  480
YDLTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-271892621184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244261KKRSCRRRLNDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G091900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951927.10.0squamosa promoter-binding-like protein 3 isoform X2
RefseqXP_004951928.10.0squamosa promoter-binding-like protein 3 isoform X2
SwissprotA2X0Q61e-173SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-173SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A368PKH90.0A0A368PKH9_SETIT; Uncharacterized protein
STRINGSi017520m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-42squamosa promoter binding protein-like 2