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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.1G091900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
SBP |
| Protein Properties |
Length: 557aa MW: 60130.7 Da PI: 10.0901 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.1G091900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 130.2 | 7.6e-41 | 260 | 336 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
CqvegC+ dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+
Seita.1G091900.1.p 260 CQVEGCKIDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLDVFDQKKRSCRRRLNDHNARRRKPQP 336
**************************************************************************997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 557 aa
Download sequence Send
to blast |
MDAKRGAGHT ILRVLDRLLG VLSFLSARFR LSFSVFWFLR PWFPLSFLPH CPCQLPQLQC 60
KNFQQDTDSS FAIIRKGARR TAGIFGSGMG SFGMDWSQKG SVLWDWENLP PIGANGNLVP 120
QAEAKFAGVE ITRHGSVHSS CGTFSSSSEM GYGSSKSSIS ASIDSSPKAG NNMELNFAPA 180
RVPDKYIRKN TDLRTSPSSV IAVSSGEPVL SLKLGKRTYF EDACGGQSVK SSPSDSSIVT 240
PPAAPVKKAK AAQNVQNSYC QVEGCKIDLS SAKDYHRKHK VCEAHSKAPK VVVAGLERRF 300
CQQCSRFHGL DVFDQKKRSC RRRLNDHNAR RRKPQPEAIS FGSSRLPAMF YGTDPRQQTS 360
LLFGQAPYGQ IRSRASSSWD NPGGAFKFAE TKASWLKPAG ATGLDALHLS SQQVWNNIMP 420
HGAHQDFAGF MAFKGTSAKV LNQGVEASVV ASDSNGNPDL QRALSLLSNN SADAGNNQPT 480
TQLHPGLSAL ASTSNAVMQQ ASPPGLWQDG TALDLHARFQ ALDPMGNGSA IAAAHELQLP 540
RPPSYNGSSS HYDLTR*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 315 | 332 | KKRSCRRRLNDHNARRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
