PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.1G088500.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 384aa MW: 41581.3 Da PI: 10.0341

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G088500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	30.7	8.4e-10	74	166	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 + r w +Dei+lL ++ + ++k+g ps + a + + + + s ++++ ++r L+ ++ + v ++++g k++d i++lsk Seita.1G088500.1.p 74 PVRSWLASDEIALLEAVSEHRQKHGRLPSPNHLAAALRSRLRAKDRLSADEISRRLRALRSRYDNAVLRMSRGTI--PVKDDDVTIYKLSK 162 6799*******************9999977777777777788899******************777766..5689999*** PP DUF573 94 kiWg 97 iW+ Seita.1G088500.1.p 163 LIWE 166 *7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-15	75	166	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MGIPNFQILA SPLSTASSDD TTTTNVSDEH LSPPSSPSIS FDSVSESDAS TSSSVASDGS 60 SGSEPVVSKK PRLPVRSWLA SDEIALLEAV SEHRQKHGRL PSPNHLAAAL RSRLRAKDRL 120 SADEISRRLR ALRSRYDNAV LRMSRGTIPV KDDDVTIYKL SKLIWEGTRK GKREKKTRAA 180 DMRKDPREFG ELTGLYPCLS AEVEAIDTGS GAAAAGLLKR AFERIGDDTA ARLEAKVKMQ 240 RVAEARASAK LDQLRTNVAK KVDWLSFPSS PLAATEATAE TPPPSCSVLT AWRPRVTAVR 300 PRQAAVVFQA PPMLVIVLGI QIPCTWNQGV GAYGVGLKLR EPAWCLPCCD DLIMGWSRGL 360 RYIANSQQHG VPLNQGNLQR AHS*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MGIPNFQILA SPLSTASSDD TTTTNVSDEH LSPPSSPSIS FDSVSESDAS TSSSVASDGS  60
SGSEPVVSKK PRLPVRSWLA SDEIALLEAV SEHRQKHGRL PSPNHLAAAL RSRLRAKDRL  120
SADEISRRLR ALRSRYDNAV LRMSRGTIPV KDDDVTIYKL SKLIWEGTRK GKREKKTRAA  180
DMRKDPREFG ELTGLYPCLS AEVEAIDTGS GAAAAGLLKR AFERIGDDTA ARLEAKVKMQ  240
RVAEARASAK LDQLRTNVAK KVDWLSFPSS PLAATEATAE TPPPSCSVLT AWRPRVTAVR  300
PRQAAVVFQA PPMLVIVLGI QIPCTWNQGV GAYGVGLKLR EPAWCLPCCD DLIMGWSRGL  360
RYIANSQQHG VPLNQGNLQR AHS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G088500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951891.1	0.0	probable transcription factor At1g11510
TrEMBL	A0A368PI83	0.0	A0A368PI83_SETIT; Uncharacterized protein
STRING	Si017150m	1e-178	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14023	5	5

Link Out ? help Back to Top
Phytozome	Seita.1G088500.1.p