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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.1G081000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
Whirly |
| Protein Properties |
Length: 230aa MW: 25317.9 Da PI: 10.2901 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.1G081000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 185.7 | 8.2e-58 | 54 | 191 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92
v+k+kaal++++++p+f +++sg+ +++r+G+++l++ +a+++rkyd+ kkq f+ls+tev++l++l++ esceffhdp++k+s+eG+v+k
Seita.1G081000.1.p 54 VFKGKAALSIHPILPSFCKMESGASRINRNGSVMLTFFPAVGQRKYDYTKKQLFSLSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKK 144
9****************************************************************************************** PP
Whirly 93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
+l++ Pl sG+fvn++v n+++k+ +++svP++kaefav+r++l+
Seita.1G081000.1.p 145 SLSITPLGSDSGYFVNITVLNNMQKTTDRLSVPITKAEFAVMRTALS 191
********************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MLRLSRFLPS ASRRGFDPKE ALWSGSLTFQ QAVSTSAANL DENSSGKKFA SYTVFKGKAA 60
LSIHPILPSF CKMESGASRI NRNGSVMLTF FPAVGQRKYD YTKKQLFSLS PTEVGSLISL 120
GPAESCEFFH DPSMKSSHEG QVKKSLSITP LGSDSGYFVN ITVLNNMQKT TDRLSVPITK 180
AEFAVMRTAL SFALPHIMGW DQVLTRHPAP QASSKPRVER PHPDSEWER*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 3e-74 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 3e-74 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 3e-74 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 3e-74 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU963457 | 0.0 | EU963457.1 Zea mays clone 262942 DNA binding protein mRNA, complete cds. |
