PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G079200.1.p
Common NameLOC101759090, SETIT_017193mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 442aa    MW: 50769.3 Da    PI: 8.8066
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G079200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-073356126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ykt+lC  ++r G C++ d+C+FaHg
  Seita.1G079200.1.p 33 YKTKLCALWQR-GGCSR-DTCSFAHG 56
                        9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.0E-122762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-53161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5823258IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-53356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MRDRSVDREF PSRERGDRPP PGMLGPPRRG PAYKTKLCAL WQRGGCSRDT CSFAHGHAEL  60
RRFPGSRTSF PPRAGRRDYR GGDFRDRFDR RRSPHRRHSP DRDSRDHRPF HDRRPISQER  120
ESSYSRSPSR KSERRHEKKP DDGETNSSRS LSISDNNDDR KKETLLSGDD KEDQEIQLKQ  180
IRQDMELLRD DKSHLEIILD EKNAEVRKIS SRVNDLDLQL RKEKEECHRM TSKIKKFIKA  240
HARFLKAQEE LKRSQARFER LGDLLASDIL KRGANEEVSS INVDEDPNGP YERSPNAATA  300
KKRSILYSTS EEAKAVKKRR ERDAEFDKPS KGTEPTKGLY LKKKLWEDEK DKIGNVVSSA  360
NTDKVKDSPV KHVLPSTGMA AHAVDDLFEA VELEDRHDPI NALIENDAGD ETRSPAMPSQ  420
PPPVVNAYEQ YEGDDEEVDV E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300319KKRSILYSTSEEAKAVKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G079200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9620390.0EU962039.1 Zea mays clone 239776 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951855.10.0zinc finger CCCH domain-containing protein 13 isoform X2
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLK3YSH40.0K3YSH4_SETIT; Uncharacterized protein
STRINGSi017193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-21C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]