PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G079200.1.p | ||||||||
Common Name | LOC101759090, SETIT_017193mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 50769.3 Da PI: 8.8066 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.7e-07 | 33 | 56 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C++ d+C+FaHg Seita.1G079200.1.p 33 YKTKLCALWQR-GGCSR-DTCSFAHG 56 9**********.*****.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-12 | 27 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-5 | 31 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.582 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-5 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MRDRSVDREF PSRERGDRPP PGMLGPPRRG PAYKTKLCAL WQRGGCSRDT CSFAHGHAEL 60 RRFPGSRTSF PPRAGRRDYR GGDFRDRFDR RRSPHRRHSP DRDSRDHRPF HDRRPISQER 120 ESSYSRSPSR KSERRHEKKP DDGETNSSRS LSISDNNDDR KKETLLSGDD KEDQEIQLKQ 180 IRQDMELLRD DKSHLEIILD EKNAEVRKIS SRVNDLDLQL RKEKEECHRM TSKIKKFIKA 240 HARFLKAQEE LKRSQARFER LGDLLASDIL KRGANEEVSS INVDEDPNGP YERSPNAATA 300 KKRSILYSTS EEAKAVKKRR ERDAEFDKPS KGTEPTKGLY LKKKLWEDEK DKIGNVVSSA 360 NTDKVKDSPV KHVLPSTGMA AHAVDDLFEA VELEDRHDPI NALIENDAGD ETRSPAMPSQ 420 PPPVVNAYEQ YEGDDEEVDV E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 319 | KKRSILYSTSEEAKAVKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G079200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962039 | 0.0 | EU962039.1 Zea mays clone 239776 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951855.1 | 0.0 | zinc finger CCCH domain-containing protein 13 isoform X2 | ||||
Swissprot | Q6H7U2 | 0.0 | C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | K3YSH4 | 0.0 | K3YSH4_SETIT; Uncharacterized protein | ||||
STRING | Si017193m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3882 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-21 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G079200.1.p |
Entrez Gene | 101759090 |
Publications ? help Back to Top | |||
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