PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G068600.1.p
Common NameLOC101778683, SETIT_017778mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 316aa    MW: 33360 Da    PI: 5.2066
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G068600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1537.3e-17142194358
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  Seita.1G068600.1.p 142 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 194
                         68***************************************9995554...44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-18140204IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185142194IPR004827Basic-leucine zipper domain
PfamPF001703.1E-14143192IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-13143195No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-13144195No hitNo description
CDDcd147025.70E-23145195No hitNo description
PROSITE patternPS000360147162IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKKCASELEL EAFIRSREDA AAAAVAAAEH KPGHDIAAQA AFGAGVFSPG DLSGFSFADS  60
NTLNGSIPNH VWSHNHNVRH PAVSTTIESQ SSICAAASPT SATNLYLKES QTLGGTSGSD  120
SDSESLLDIE GGPCEQSTNP QDVKRMRRMV SNRESARRSR KRKQAHLADL ETQVDQLRGE  180
NASLFKQLTD ANQQFTTAVT DNRILKSDVE ALRVKVKLAE DMVARGALTC GLGSLGLSPV  240
LNPRQACRGP DVLSGLDFAG DDPCFAGLSP TEQVQNSPLQ SIASLESLEN RIASEVTSCG  300
GPGVDVWPWD GGLSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162RRSRKRK
2156163RRSRKRKQ
3158163SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G068600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0346890.0BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds.
GenBankJX4699220.0JX469922.1 Zea mays subsp. mays clone UT3178 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951740.10.0bZIP transcription factor RISBZ4 isoform X1
SwissprotQ6H5001e-142RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLK3YU950.0K3YU95_SETIT; Uncharacterized protein
STRINGSi017778m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.18e-45basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]