PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G066300.1.p
Common NameSETIT_017338mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 430aa    MW: 45198.8 Da    PI: 7.1836
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G066300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.4e-40201277177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +Cq+egC+adls ak+yhrrhkvCe+h+ka++v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++
  Seita.1G066300.1.p 201 RCQAEGCKADLSAAKHYHRRHKVCEFHAKAAAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPA 277
                         6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33194263IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.12199276IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37200277IPR004333Transcription factor, SBP-box
PfamPF031102.1E-30202275IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MMSSRMMNTN AMAAPANDVD FCFGAMQAQQ PYVVGFDAGA MAMPSVERPL LQHHSNLYDS  60
FDLSAAAAAG GFPFQEPGLL PPASLPLAPP SLQLPLLTTS LLGVPTAAEM YHPFGGAGGA  120
AAFLKREDGG GGALVDGGGG TIGLNLGRRT YFSPADVLAV DRLLTRSARL VDGVGMGMGL  180
GMGVLGLGLG AAHHHQQQPP RCQAEGCKAD LSAAKHYHRR HKVCEFHAKA AAVAAAGKQQ  240
RFCQQCSRFH VLAEFDEAKR SCRKRLTEHN RRRRKPAGAQ AGKYSSPPPK RADTTCITTS  300
CNSDHNKSST AAAKSTAISP NGSGVSCLDA MDNGQPSSAA AEPTSLSLAA LPLHDDKDDD  360
GGLDSMLMRQ VQGRRDDDEE HRRFMTSLVM QQQAQNQLDG GGGNILSCSS ASDDQQNGGC  420
NGFFEVDFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-282022751184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258275KRSCRKRLTEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G066300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116141e-151AJ011614.1 Zea mays mRNA for SBP-domain protein 1.
GenBankEU9668911e-151EU966891.1 Zea mays clone 297975 SBP-domain protein 1 mRNA, complete cds.
GenBankKJ7280091e-151KJ728009.1 Zea mays clone pUT6144 SBP transcription factor (SBP10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951719.10.0squamosa promoter-binding-like protein 5
SwissprotQ0E3F85e-71SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLA0A368PHG60.0A0A368PHG6_SETIT; Uncharacterized protein
STRINGSi017338m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-35squamosa promoter binding protein-like 8