PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G052000.1.p

Common Name

LOC101753963, SETIT_017847mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 315aa MW: 33753.5 Da PI: 5.3748

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G052000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4e-10	128	176	3	51
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 + k+ rr+++NR +A +sR++Kk +++ Le k+k Leae +L l+ Seita.1G052000.1.p 128 DGKKKRRRMRNRDSAMKSREKKKLYVKDLEMKSKYLEAECCRLSYALQC 176 5699***********************************9888766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.4E-14	125	189	No hit	No description
SMART	SM00338	1.9E-5	126	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.795	128	170	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-9	130	185	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-11	130	188	No hit	No description
PROSITE pattern	PS00036	0	133	148	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MAAAGFRGGG EYDLPLEEVD AVLASFSGDP AAVFAPLPAP EAVAGASREL LAPGEGLREG 60 LGEVEKFLME DYENEAGVDG VDEFLNGVFV GDGEDDGSPK TTGERSADGA SAGEDEEVAG 120 ADGGDDPDGK KKRRRMRNRD SAMKSREKKK LYVKDLEMKS KYLEAECCRL SYALQCCAAE 180 NMALRQSLLK DRPVGAPTAM QESAVLTETL PLVSLLWLVS IVCLFLTPGV PNRSLVAPSS 240 LGRDLAKLAR TSTKGVKMFR VATNRDDPRS LELVRLGRRC RCARARIKSP WLPWYAVAAT 300 AGRRSSCKPS LSCC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	134	KKKRRR
2	132	149	RRRMRNRDSAMKSREKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G052000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951593.1	0.0	bZIP transcription factor 50
Swissprot	Q69XV0	3e-76	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	K3YUA1	0.0	K3YUA1_SETIT; Uncharacterized protein
STRING	Si017847m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	3e-12	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Seita.1G052000.1.p
Entrez Gene	101753963

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]