PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G044700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23149.1 Da PI: 10.0322 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 14 | 62 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 ++++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ + Seita.1G044700.1.p 14 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 62 59*******9.**********8.....334*********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.21E-32 | 14 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-33 | 15 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.878 | 15 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-39 | 15 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-20 | 15 | 73 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.5E-12 | 15 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010143 | Biological Process | cutin biosynthetic process | ||||
GO:0010166 | Biological Process | wax metabolic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MTENLHSRKM VQPKKFRGVR QRHWGSWVSE IRHPLLKRRV WLGTFETAEE AARAYDEAAV 60 LMSGRNAKTN FPVQRSSTGE PAPAVGRDAR SNIGGGSSTA NLSQILSAKL RKCCKAPSPS 120 LTCLRLDPEK SHIGVWQKRA GARADSNWVM TVELNKEAAS TGAASQSTSA TTASPATVID 180 DEERIALQMI EELLSSSSPV SPSHGDDQGH FVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 14 | 80 | 4 | 70 | ATERF1 |
3gcc_A | 1e-16 | 14 | 80 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G044700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960411 | 0.0 | EU960411.1 Zea mays clone 224679 ethylene responsive element mRNA, complete cds. | |||
GenBank | KJ727837 | 0.0 | KJ727837.1 Zea mays clone pUT5790 AP2-EREBP transcription factor (EREB46) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951533.1 | 1e-157 | ethylene-responsive transcription factor WIN1-like | ||||
Swissprot | Q9XI33 | 2e-79 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A368PH27 | 1e-155 | A0A368PH27_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Aa02977.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3717 | 38 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 2e-64 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G044700.1.p |