 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.1G014000.1.p |
Common Name | LOC101769097, SETIT_017753mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
C3H |
Protein Properties |
Length: 332aa MW: 36060.9 Da PI: 8.0571 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.1G014000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 38.1 | 2.5e-12 | 189 | 214 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
Seita.1G014000.1.p 189 YQPDICKDYKETGYCGYGDSCKFMHD 214
67789********************7 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 1.96E-9 | 187 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 188 | 216 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 188 | 215 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 189 | 214 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 189 | 219 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.9E-13 | 251 | 311 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 6.6E-8 | 265 | 305 | No hit | No description |
SuperFamily | SSF57850 | 7.61E-13 | 265 | 307 | No hit | No description |
SMART | SM00184 | 1.6E-4 | 266 | 303 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 2.34E-7 | 266 | 305 | No hit | No description |
PROSITE profile | PS50089 | 10.527 | 266 | 304 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 281 | 290 | IPR017907 | Zinc finger, RING-type, conserved site |
Sequence ? help Back to Top |
Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MADGGGSGRE PGSGAGTAPV CSFVRKPPKN IRKRPAAPAG SDDDDGGGGG ALAALRSKKG 60 PSSAGKLVFS SADASSEPRR FQYESSRTIQ STDSRATATL ETETEFDRDA RAIRERQLKQ 120 AEEALKKNPS GAASASASGA GEVYKGIHGY TDHKAGFRRE HTVSSEKAGG SHGPLRASAH 180 IRLSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQMEKEWEE AEKARKRRIA 240 MGGGGSDDEA AEDEDDDDEE ALPFACFICR QPFVDPVVTK CKHYFCEHCA LKHHSKNKKC 300 FVCNKATLGI FNAAQEIRKK MAQDKKQQQE Q*
|