PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.5699s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 128aa    MW: 14163.4 Da    PI: 6.7551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.5699s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.93.3e-0961116148
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevd....iykvePwdLp 48 
                             lp+G++F+Ptd el+ e+L+ kv +++       +++  +i+++d    i++++P++Lp
  SapurV1A.5699s0010.1.p  61 LPAGVKFDPTDLELL-EHLEGKVLKSDtckvhplIDE--FIPTIDgengICYTHPEKLP 116
                             799************.99****999887776543222..3444444445*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-953119IPR003441NAC domain
PROSITE profilePS5100511.09861127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MTWCNGVCKN VQTIERSSPP PCKASTVLAQ EHKECLIRSC PSCGHQMRCR DQARIHDLPG  60
LPAGVKFDPT DLELLEHLEG KVLKSDTCKV HPLIDEFIPT IDGENGICYT HPEKLPGDNI  120
PGMLKRY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.5699s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707931e-121AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309767.11e-70NAC domain-containing protein 73
RefseqXP_011047704.11e-70PREDICTED: NAC domain-containing protein 8-like
RefseqXP_011047705.11e-70PREDICTED: NAC domain-containing protein 8-like
SwissprotO494592e-46NAC73_ARATH; NAC domain-containing protein 73
TrEMBLB9HGS23e-69B9HGS2_POPTR; NAC family protein
STRINGPOPTR_0007s01350.16e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1752645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.19e-49NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]