PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.5380s0010.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 507aa MW: 56044.6 Da PI: 9.8073 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 391 | 439 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v +G g+W+ I r Rt ++k++w+++l SapurV1A.5380s0010.8.p 391 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 439 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.545 | 384 | 443 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 386 | 446 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-7 | 388 | 441 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.03E-15 | 390 | 449 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 8.46E-18 | 390 | 440 | No hit | No description |
Pfam | PF00249 | 1.6E-5 | 391 | 439 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MSGLLQSRNK EAGSDKLNAR LEETVPSLAP SLSESHFNQS GSAGECSHSS DNLVAAGSTS 60 SAVTTKPDFS KLKGEICLDN LSIKELHETF KATFGRETTV KDKQWLKRRI SMGLTNSCDV 120 SVTSFIIKDN KLVKKENEEI SNCMDGSYAE DQPIGNQKDL LTSLNQLDYH QVVPEKRMEN 180 PSLDDNSGSD DHQTEQRAAK RVRKPTKRYI EELSEVEPKE SNGRLMNLAK NSGHGLISLK 240 SHVRPVRNVI LGGRTVVTRL DSLGGYGIEV PCVSRVRRSR PRKNFMALLK FNPSGMGTEA 300 MLVKKVHGDH SFPPDDEKES RVFLKANSTP EHVHHQFIGV PEKDKQFSVM SAIGLGHNME 360 LKCMNSSGDS DDNVVTVPTP KGGIRRKHHR AWTLCEVMKL VEGVSSYGAG RWSEIKRLAF 420 ASYSYRTSVD LKDKWRNLLK ASLAQTPQDN GMNSRKNTGA MPIPAPILLK VRELAEMQAQ 480 ALPNLSSTKI AGSPRKNVHE KQTGFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 282 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.5380s0010.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453600.1 | 0.0 | uncharacterized protein LOC7475702 isoform X3 | ||||
TrEMBL | A0A2K2B2H0 | 0.0 | A0A2K2B2H0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06240.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-104 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.5380s0010.8.p |