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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.5380s0010.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 537aa MW: 59651.9 Da PI: 9.0981 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 421 | 469 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v +G g+W+ I r Rt ++k++w+++l SapurV1A.5380s0010.6.p 421 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 469 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.545 | 414 | 473 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 416 | 476 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-7 | 418 | 471 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.18E-15 | 420 | 479 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 5.65E-18 | 420 | 470 | No hit | No description |
Pfam | PF00249 | 1.8E-5 | 421 | 469 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MLQKVKEEQR LRLACGSPYC SSAYLIVDSQ CCDQHDKFLH IDEKLQCVIP LQETVPSLAP 60 SLSESHFNQS GSAGECSHSS DNLVAAGSTS SAVTTKPDFS KLKGEICLDN LSIKELHETF 120 KATFGRETTV KDKQWLKRRI SMGLTNSCDV SVTSFIIKDN KLVKKENEEI SNCMDGSYAE 180 DQPIGNQKDL LTSLNQLDYH QVVPEKRMEN PSLDDNSGSD DHQTEQRAAK RVRKPTKRYI 240 EELSEVEPKE SNGRLMNLAK NSGHGLISLK SHVRPVRNVI LGGRTVVTRL DSLGGYGIEV 300 PCVSRVRRSR PRKNFMALLK FNPSGMGTEA MLVKKVHGDH SFPPDDEKES RVFLKANSTP 360 EHVHHQFIGV PEKDKQFSVM SAIGLGHNME LKCMNSSGDS DDNVVTVPTP KGGIRRKHHR 420 AWTLCEVMKL VEGVSSYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLK ASLAQTPQDN 480 GMNSRKNTGA MPIPAPILLK VRELAEMQAQ ALPNLSSTKI AGSPRKNVHE KQTGFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 306 | 312 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.5380s0010.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453605.1 | 0.0 | uncharacterized protein LOC7475702 isoform X7 | ||||
TrEMBL | A0A2K2B2H7 | 0.0 | A0A2K2B2H7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06240.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-107 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.5380s0010.6.p |