PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.5380s0010.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 553aa    MW: 61019.1 Da    PI: 9.7732
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.5380s0010.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07437485348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             +WT  E  +lv++v  +G g+W+ I r        Rt  ++k++w+++l
  SapurV1A.5380s0010.4.p 437 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 485
                             7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.545430489IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-12432492IPR009057Homeodomain-like
SMARTSM007172.9E-7434487IPR001005SANT/Myb domain
CDDcd116609.19E-18436486No hitNo description
SuperFamilySSF466892.26E-15436495IPR009057Homeodomain-like
PfamPF002491.8E-5437485IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MSGLLQSRNK EAGSDKLNAR LEETVPSLAP SLSESHFNQS GSAGECSHSS DNLVAAGSTS  60
SAVTTKPDFS KLKGEICLDN LSIKELHETF KATFGRETTV KDKQWLKRRI SMGLTNSCDV  120
SVTSFIIKDN KLVKKENEEI SNCMDGSYAE DQPIGNQKDL LTSLNQLDYH QVVPEKRMEN  180
PSLDDNSGSD DHQTEQRAAK RVRKPTKRYI EELSEVEPKE SNGRLMNLAK NSGHGLISLK  240
SHVRPVRNVI LGGRTVVTRL DSLGGYGIEV PCVSRVRRSR PRKNFMALLK FNPSGMGTEA  300
MLVKKVHGDH SFPPDDEKES RVFLKANSTP EHVHHQKFNP SGTGTEATSI KKAFGDHSFP  360
PDDGKESRVL KVISTPEHVH NQFIGVPEKD KQFSVMSAIG LGHNMELKCM NSSGDSDDNV  420
VTVPTPKGGI RRKHHRAWTL CEVMKLVEGV SSYGAGRWSE IKRLAFASYS YRTSVDLKDK  480
WRNLLKASLA QTPQDNGMNS RKNTGAMPIP APILLKVREL AEMQAQALPN LSSTKIAGSP  540
RKNVHEKQTG FL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276282RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.5380s0010.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453599.10.0uncharacterized protein LOC7475702 isoform X2
TrEMBLA0A2K2B2H60.0A0A2K2B2H6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-102TRF-like 6