PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.5380s0010.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 583aa    MW: 64626.4 Da    PI: 9.088
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.5380s0010.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07467515348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             +WT  E  +lv++v  +G g+W+ I r        Rt  ++k++w+++l
  SapurV1A.5380s0010.3.p 467 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 515
                             7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.545460519IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-12462522IPR009057Homeodomain-like
SMARTSM007172.9E-7464517IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-15466525IPR009057Homeodomain-like
CDDcd116606.19E-18466516No hitNo description
PfamPF002492.0E-5467515IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MLQKVKEEQR LRLACGSPYC SSAYLIVDSQ CCDQHDKFLH IDEKLQCVIP LQETVPSLAP  60
SLSESHFNQS GSAGECSHSS DNLVAAGSTS SAVTTKPDFS KLKGEICLDN LSIKELHETF  120
KATFGRETTV KDKQWLKRRI SMGLTNSCDV SVTSFIIKDN KLVKKENEEI SNCMDGSYAE  180
DQPIGNQKDL LTSLNQLDYH QVVPEKRMEN PSLDDNSGSD DHQTEQRAAK RVRKPTKRYI  240
EELSEVEPKE SNGRLMNLAK NSGHGLISLK SHVRPVRNVI LGGRTVVTRL DSLGGYGIEV  300
PCVSRVRRSR PRKNFMALLK FNPSGMGTEA MLVKKVHGDH SFPPDDEKES RVFLKANSTP  360
EHVHHQKFNP SGTGTEATSI KKAFGDHSFP PDDGKESRVL KVISTPEHVH NQFIGVPEKD  420
KQFSVMSAIG LGHNMELKCM NSSGDSDDNV VTVPTPKGGI RRKHHRAWTL CEVMKLVEGV  480
SSYGAGRWSE IKRLAFASYS YRTSVDLKDK WRNLLKASLA QTPQDNGMNS RKNTGAMPIP  540
APILLKVREL AEMQAQALPN LSSTKIAGSP RKNVHEKQTG FL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.5380s0010.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453604.10.0uncharacterized protein LOC7475702 isoform X6
TrEMBLA0A2K2B2G60.0A0A2K2B2G6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-104TRF-like 6