PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4260s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 190aa    MW: 20564.8 Da    PI: 9.9549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4260s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00185072123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C++ Fs+   L  H  +H
  SapurV1A.4260s0020.1.p 50 FSCKTCSRNFSSFQALGGHRASH 72
                            89**********99999998887 PP
2zf-C2H210.70.001797119123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++Cg  F+    L  H+r+H
  SapurV1A.4260s0020.1.p  97 HQCSICGLEFPIGQALGGHMRRH 119
                             79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.32E-848119No hitNo description
SMARTSM0035525072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1385077IPR007087Zinc finger, C2H2
PfamPF139126.1E-105074IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PROSITE profilePS501579.03797124IPR007087Zinc finger, C2H2
SMARTSM003550.1397119IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-1097121IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSSIAMKRGR EEGDLDMAKC LMLLYKVGKG DDDHELPPDY KPPSRAGRLF SCKTCSRNFS  60
SFQALGGHRA SHKKPKLVGS AGNLLEFPPS PPKPKNHQCS ICGLEFPIGQ ALGGHMRRHR  120
ANNIHAASNI HAASKSTDNE LAAAHPPAVP VLKKSNSSKR VLCLDLSLAL PMYQNESELG  180
TRPVLKCFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.4260s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314198.31e-101zinc finger protein ZAT12
TrEMBLA0A2K1Z1T61e-100A0A2K1Z1T6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03280.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-29C2H2 family protein