PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.4098s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 264aa MW: 30040 Da PI: 5.702

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.4098s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.9	4e-29	99	186	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+ SapurV1A.4098s0020.1.p 99 FYNTYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHS 183 ****************************************9988..9************************************ PP FAR1 89 lap 91 l+p SapurV1A.4098s0020.1.p 184 LTP 186 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-26	99	186	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEVIEIVDVV FAVDFIIDND ANGDIAGNVA VDIARARDEN KIAENSVEGE FEEYEDHKID 60 KESLAIDMIP DSVPAMPMVA ADEPYLGQEF DSEASAHAFY NTYATRVGFV IRVSKLSRSR 120 RDGSAIGRAL VCNKEGFRMP DKREKIVRQR AETRVGCRAM ILVRKVSSGK WVVTKFVKEH 180 THSLTPGKAR RDCIYDQYPN EHDKIRELSQ QLAIEKKRAA TYKRHLELIF EQIEEQNEIL 240 SKKIQHIVDS VRDMEDKQPQ SQT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.4098s0020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	0.0	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003411.1	1e-179	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A2K1R5Z1	1e-169	A0A2K1R5Z1_POPTR; Uncharacterized protein
STRING	POPTR_0017s05780.1	1e-178	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-112	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.4098s0020.1.p