PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3982s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 382aa    MW: 43692.8 Da    PI: 5.5291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3982s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.53.7e-55451741129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wk
  SapurV1A.3982s0010.2.p  45 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWK 130
                             69****************************.9***************953432233667**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             atg+dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  SapurV1A.3982s0010.2.p 131 ATGRDKSVYD-KTKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 174
                             **********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-6037194IPR003441NAC domain
PROSITE profilePS5100559.40545194IPR003441NAC domain
PfamPF023658.4E-2946173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MKNLDKQTKW SDPVSALMRH TLCSRKTGAH ETSTVVMMES MESCVPPGFR FHPTDEELVG  60
YYLRKKVASQ KIDLDVIRDI DLYRIEPWDL QERCRIGYEE QNEWYFFSHK DKKYPTGTRT  120
NRATMAGFWK ATGRDKSVYD KTKLIGMRKT LVFYKGRAPN GQKSDWIMHE YRLESDENGP  180
PQEEGWVVCR AFKKRATGQN KSIEGWDSSY FYEESSGVSS VVDPIDYIAR QPQNFLAQNF  240
LCNQETEGDN LSFMHSENYV QLPQLESPSL PLIKRPSSSI SLISENNNSN RVEEEQNRML  300
SGNSAQKVTD WRALDKFVAS QLSHEDRYDG DGVSSFVGAE NNSSDMPLLL LQSGRDEGNN  360
KFNGFLSSSP DCDFGICIFE K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-50282005171NO APICAL MERISTEM PROTEIN
1ut4_B7e-50282005171NO APICAL MERISTEM PROTEIN
1ut7_A7e-50282005171NO APICAL MERISTEM PROTEIN
1ut7_B7e-50282005171NO APICAL MERISTEM PROTEIN
3swm_A7e-50282008174NAC domain-containing protein 19
3swm_B7e-50282008174NAC domain-containing protein 19
3swm_C7e-50282008174NAC domain-containing protein 19
3swm_D7e-50282008174NAC domain-containing protein 19
3swp_A7e-50282008174NAC domain-containing protein 19
3swp_B7e-50282008174NAC domain-containing protein 19
3swp_C7e-50282008174NAC domain-containing protein 19
3swp_D7e-50282008174NAC domain-containing protein 19
4dul_A7e-50282005171NAC domain-containing protein 19
4dul_B7e-50282005171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3982s0010.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5999320.0AB599932.1 Populus trichocarpa PtVNS01 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460834.10.0NAC domain-containing protein 37 isoform X2
SwissprotQ9SL411e-170NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2K1ZMJ00.0A0A2K1ZMJ0_POPTR; NAC family protein
STRINGPOPTR_0007s13910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-149vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]