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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3302s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | RAV | ||||||||
Protein Properties | Length: 364aa MW: 40899.9 Da PI: 9.2299 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.1 | 5.2e-14 | 69 | 117 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g SapurV1A.3302s0010.1.p 69 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDIAAQRFRG 117 89****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 104.4 | 6e-33 | 202 | 303 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h ++++++++ l led sg++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v SapurV1A.3302s0010.1.p 202 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqstSNNSTKGVLLNLEDVSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVC 288 89*****************************9888899************************************************* PP EEE-SSSEE..EEEE CS B3 82 Fkldgrsefelvvkv 96 F+++ +++l++ + SapurV1A.3302s0010.1.p 289 FQRSTGPDKQLYIDW 303 **8766777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-16 | 69 | 125 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.20E-25 | 69 | 127 | No hit | No description |
Pfam | PF00847 | 6.2E-9 | 69 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.02 | 70 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-28 | 70 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-20 | 70 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-41 | 197 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.69E-30 | 201 | 292 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-31 | 201 | 301 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.7E-30 | 202 | 303 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.508 | 202 | 307 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-26 | 202 | 307 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MDGSCIDEST ISITDNAISI TPACLSPFPP PATTTKSPSE SLCRVGSGNS VILDLESGVE 60 AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE ENEAARAYDI AAQRFRGRDS 120 VTNFKQVDET EDDEIEAAFL NAHSKAEIVD MLRKHTYSDE LEQSKRNHKS NKGANGKQYN 180 NYGDNSYDHG CVRVLRAREQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSTSNNSTKG 240 VLLNLEDVSG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDTVCFQ RSTGPDKQLY 300 IDWKPRGASS LVQPVQMVRL FGVNIFNVPG MENGCNGKRS MRDLELLSID HQYSKKQRIV 360 RAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-59 | 199 | 311 | 11 | 122 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3302s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021709.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like | ||||
Swissprot | Q9C6M5 | 1e-150 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | B9HWL7 | 0.0 | B9HWL7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s13930.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-152 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3302s0010.1.p |