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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3204s0030.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 185aa MW: 21342.7 Da PI: 9.8035 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.6 | 1.6e-26 | 20 | 108 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++r++tr gCka+++vk +k+gkw++tk++++HnH+ SapurV1A.3204s0030.2.p 20 FYDEYARQIGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHP 106 9**************************************999999989*************************************** PP FAR1 89 la 90 l+ SapurV1A.3204s0030.2.p 107 LV 108 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-24 | 20 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVVEPHEGMV FDSEDAAKIF YDEYARQIGF VMRVMSCRRS ERDGRILARR LGCNKEGYCV 60 SIRGKFGNVR KPRPSTREGC KAMIHVKFDK SGKWVITKFV KDHNHPLVVA PREARQTLDE 120 KDKKIQELTA ELRNKKRLCA TYQEQLAAFV KIVEDHSEKL SKKVKNVVEN LKEFESIEQE 180 LMPA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3204s0030.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 1e-169 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444552.1 | 1e-129 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024448822.1 | 1e-129 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 3e-24 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A3N7G3V3 | 1e-128 | A0A3N7G3V3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s05820.1 | 1e-129 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-101 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3204s0030.2.p |
Publications ? help Back to Top | |||
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