PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3093s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 533aa    MW: 55549.5 Da    PI: 8.4924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3093s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056991123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C+k F r  nL+ H r H
  SapurV1A.3093s0010.1.p 69 FVCEICNKGFQRDQNLQLHRRGH 91
                            89*******************88 PP
2zf-C2H211.10.0012145167123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k +  +s+ k H + +
  SapurV1A.3093s0010.1.p 145 WKCDKCSKKYAVQSDWKAHSKIC 167
                             58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.14E-76891No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496991IPR007087Zinc finger, C2H2
PfamPF121718.6E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355190110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.14E-7140165No hitNo description
SMARTSM00355150145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MPVDLDNSST ASGEASVSSS GNQPPPPPQQ PPSKSAATAK KKRNLPGMPD PEAEVIALSP  60
KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKDVKKRVY VCPEPTCVHH  120
DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR EYKCDCGTLF  180
SRRDSFITHR AFCDALAEES ARAQPHTPNP NPKPIKESDP KVQVESSPPP APLPPPVAPD  240
FGSDQGQAPP GLAQSTGMIS SPVLAIQSPE LPDNPPQFIE EAPAPAPTPA TVTAGFNGSF  300
GSGTSSSSNG SSTSSVFASL FASSTASGNL QAPQSPAFTD LIHAMAHPDR PTDLTPSSIE  360
PISLCLSTNQ GSSIFGTAGQ ERRQYAPPPQ PAMSATALLQ KAAQMGAAAT NASLLRGLGI  420
VSSSSSSAQP DNMQWGQRQM EPENSSVTAG LGLGLPCDGG SGLKELMMGT PSVFGPKHAT  480
LDFLGLGMAA GGSPSGGLSA LITSIGGGLD VAAAAAASFG GGEFSGKDMR RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35141209371Zinc finger protein JACKDAW
5b3h_F2e-35141209371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3093s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380751.10.0protein indeterminate-domain 2
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLU5G4W20.0U5G4W2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-144C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]