PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3066s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 453aa    MW: 50014.8 Da    PI: 8.6905
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3066s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-1777136155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  SapurV1A.3066s0020.1.p  77 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 136
                             57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-1777145IPR016177DNA-binding domain
PfamPF008477.0E-1377136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1578145IPR001471AP2/ERF domain
SMARTSM003801.9E-2578150IPR001471AP2/ERF domain
PROSITE profilePS5103220.12678144IPR001471AP2/ERF domain
PRINTSPR003674.7E-57990IPR001471AP2/ERF domain
PRINTSPR003674.7E-5126146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MASSSSSDPV LKPEIGGGIC GRGSGGRGGG ESSEAAVIAN DQLLLYRGLK KPKKERGCTA  60
KERISKMPPC TAGKRSSIYR GVTRHRWTGR YEAHLWDKST WNQNQNKKGK QVYLGAYDDE  120
EAAARAYDLA ALKYWGPGTL INFPVTDYTR DLEEMQNVSR EEYLASLRRK SSGFSRGISK  180
YRALSSRWDS SYSRVPGSEY FSNVNYVLCC LAKSPFDNKL VTEGSCAGDD QAAESEYSFC  240
IERKIDLTGY IKWWGSNKTR LAESMSKSSE DTKHGCADDI GSELKTSERE VQCTEPYQMP  300
RLGLSVEGKR HKGSKISALS ILSQSAAYKN LQEKASKKQE TGPENDENEN RNNINKMDHG  360
KAVEKSTSHD SNSERLGAAL GMTGGLSLQR NAYPLTPFLS APLLTNYNTI DPLVDPILWT  420
SLVPSLPTGL SRNPEVTKTE TSSTYSFFRP EE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3066s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175871e-180AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458881.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-170AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3N7F2R70.0A0A3N7F2R7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s04820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-160AP2 family protein