PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2885s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 36933.6 Da PI: 7.2897 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.6e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv++++++G g+W++ a++ g++Rt+k+c++rw++yl SapurV1A.2885s0020.1.p 24 RGPWTLEEDTLLVHYIARHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 71 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.8e-17 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ SapurV1A.2885s0020.1.p 77 RGNLTPQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.309 | 19 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-31 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-16 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.48E-12 | 26 | 71 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 39 | 48 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
SMART | SM00717 | 4.7E-15 | 76 | 124 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.646 | 76 | 126 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 79 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-11 | 81 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MRVNTMSSLK KTTGSKEDDA ELRRGPWTLE EDTLLVHYIA RHGEGRWNLL AKRAGLRRTG 60 KSCRLRWLNY LKPDVKRGNL TPQEQLLILD LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT 120 RVQKQARHLR IDANSTAFQG IIRCLWMPRL LQKIGGSSAP SAAMAAQNPS VSQPIPSYAP 180 PLPAFPPALP PLPQQDAPLD MSVIMHCMEH HQQTSDSEHG TSSCISSAES MNVSQMSQLS 240 EYPTSPFQTI GSNSDYSNLV KDCYYVDSNC YDMESINLAT MSVPGELGIS AVDRHMGDGD 300 WSGYDFGDNE WNMDELWPFR NLQGKET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-26 | 21 | 125 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2885s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318546.1 | 0.0 | transcription factor MYB62 | ||||
TrEMBL | B9I2L1 | 0.0 | B9I2L1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s05200.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25340.1 | 1e-77 | myb domain protein 116 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2885s0020.1.p |