![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.2860s0030.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 18292.6 Da PI: 6.3351 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 31.9 | 3.7e-10 | 31 | 70 | 58 | 97 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l SapurV1A.2860s0030.2.p 31 ALSLLFEACGRTVNPVNGAVGLLWSGNWHVCQEAVETVLS 70 569*******************************998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 20 | No hit | No description |
Pfam | PF03195 | 6.3E-6 | 31 | 68 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MPKVTLPCFS PNFLAVVISC LSSPPYPNPN ALSLLFEACG RTVNPVNGAV GLLWSGNWHV 60 CQEAVETVLS GGALRPLHGI LTGFLAPNCD ESSDGFSAAV HDMAWNQSKS FAKESNNEVV 120 SDHHVNPCLA RGIGGRGKRG REAVSFYTGG ESETISFESS GGDQKRLLNL FV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.2860s0030.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301153.3 | 1e-82 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SZE8 | 6e-24 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A1L6K5D3 | 2e-82 | A0A1L6K5D3_POPTO; LOB domain-containing protein 39-like | ||||
STRING | POPTR_0002s12020.1 | 3e-81 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-26 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.2860s0030.2.p |