PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2810s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 329aa MW: 36632.1 Da PI: 4.6725

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2810s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.6	4.4e-15	72	159	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ +++s+k qCk++++ ++k+yk +k+ + ++ + +s++p+fd SapurV1A.2810s0010.1.p 72 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVAEIVsSREDYSKSAKtdiQCKNRIDTVKKKYKLEKAKMASG--GGVSSWPFFD 156 7***********************************867778877754449****************97..67779*** PP trihelix 84 qle 86 l+ SapurV1A.2810s0010.1.p 157 PLD 159 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-24	70	161	No hit	No description
Pfam	PF09184	1.0E-5	96	241	IPR015267	Protein phosphatase 4 core regulatory subunit R2
Gene3D	G3DSA:3.90.810.10	4.7E-7	305	328	IPR000095	CRIB domain
CDD	cd00132	6.27E-5	306	329	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030289	Cellular Component	protein phosphatase 4 complex
GO:0030362	Molecular Function	protein phosphatase type 4 regulator activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDDDDDIQSH SNTTESPSPS PPPPNGRITV TASTTATVPP PPPPQQTDNS LALVLPTKSK 60 VNGGGGGGRE DCWSEGATGV LIDAWGERYL ELSRGNLKQK HWKDVAEIVS SREDYSKSAK 120 TDIQCKNRID TVKKKYKLEK AKMASGGGVS SWPFFDPLDR LIGSTARVPA IESGCKFPVA 180 IPVRVRSSTS RRAGTNHYHF RTNQNMKTRN RKWGKDDDDD DDEEEEEEEE EEEEEEEEEE 240 EELYSDASGN PISTPFIGSR EGTGGNERGR NRTRNKDFAF LDIFVTALRK SLVTCSVERD 300 DVSSSMDISW PTEVKHVSHV TFDRFNGFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2810s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024461013.1	1e-110	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	3e-65	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A2K2B9V5	8e-79	A0A2K2B9V5_POPTR; Uncharacterized protein
STRING	POPTR_0001s06330.1	6e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	8e-52	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	SapurV1A.2810s0010.1.p