PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2603s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 324aa    MW: 35284.4 Da    PI: 7.1504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2603s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000412162541255
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  SapurV1A.2603s0010.2.p 216 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 254
                             6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.585204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-10214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-6214258No hitNo description
Gene3DG3DSA:4.10.280.101.2E-7218260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMSGNPS WWSINNMRPP PTHHQQPSPF LPPPSLFPQY LPSTSSSSSS  60
SLHLPCWNDN PDQLPESWSQ LLLGGLVCDD DKSNLSNFQA KKMENWEEQV LHQATSASVV  120
DVKQENSASS YVYGHANEDF QATAKPTACS QVMPSSSPRS CITSFSSNML DFSTNKGDGR  180
HPPPDRSSDC NSTATGGAVK KARVQSSSAQ PTFKVRKEKL GDRITALHQL VSPFGKTDTA  240
SVLLEAIGYI RFLQNQIEAL SLPYLGSGST NMRQQQSVQG ERNCIFPEDP GQVSFIGSIT  300
SLKGFGELEF EISKLRKAAS TVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2603s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1463810.0EF146381.1 Populus trichocarpa clone WS0117_M02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325008.21e-175transcription factor bHLH68
SwissprotQ8S3D11e-72BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1L6K5S61e-174A0A1L6K5S6_POPTO; Uncharacterized protein
STRINGPOPTR_0018s09060.11e-174(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]