![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.2603s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 38032.4 Da PI: 7.1649 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00046 | 216 | 254 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq SapurV1A.2603s0010.1.p 216 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 254 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.585 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-10 | 214 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.85E-6 | 214 | 258 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-7 | 218 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MNRGVLQSSP VQQMMSGNPS WWSINNMRPP PTHHQQPSPF LPPPSLFPQY LPSTSSSSSS 60 SLHLPCWNDN PDQLPESWSQ LLLGGLVCDD DKSNLSNFQA KKMENWEEQV LHQATSASVV 120 DVKQENSASS YVYGHANEDF QATAKPTACS QVMPSSSPRS CITSFSSNML DFSTNKGDGR 180 HPPPDRSSDC NSTATGGAVK KARVQSSSAQ PTFKVRKEKL GDRITALHQL VSPFGKTDTA 240 SVLLEAIGYI RFLQNQIEAL SLPYLGSGST NMRQQQSVQG ERNCIFPEDP GQLLNDSCIK 300 KKGASQQDSH GEAKDLRSRG LCLVPVSCTL QVGSDNGADY WAPALGGGFR * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.2603s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF146381 | 0.0 | EF146381.1 Populus trichocarpa clone WS0117_M02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325008.2 | 0.0 | transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 1e-104 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A1L6K5S6 | 0.0 | A0A1L6K5S6_POPTO; Uncharacterized protein | ||||
TrEMBL | B9ILQ2 | 0.0 | B9ILQ2_POPTR; BHLH family protein | ||||
STRING | POPTR_0018s09060.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29100.1 | 2e-93 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.2603s0010.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|