PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2567s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 491aa    MW: 54828.1 Da    PI: 6.9225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2567s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-163279148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT  Ed +l+++vk++G g+W+++ +  g+ R++k+c++rw ++l
  SapurV1A.2567s0040.1.p 32 KGPWTVAEDAILIEYVKKHGEGNWNSVQKNCGLMRCGKSCRLRWANHL 79
                            79******************************************9986 PP
2Myb_DNA-binding55.11.8e-1785128146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +g++T+eE+++++++++++G++ W++ a+ ++ gRt++++k++w++
  SapurV1A.2567s0040.1.p  85 KGSFTPEEEQIIIELHAKHGNK-WARMASQLP-GRTDNEIKNYWNT 128
                             799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5282779IPR017930Myb domain
SuperFamilySSF466894.87E-3129126IPR009057Homeodomain-like
SMARTSM007172.8E-133181IPR001005SANT/Myb domain
PfamPF002495.4E-153279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-243386IPR009057Homeodomain-like
CDDcd001672.23E-113479No hitNo description
PROSITE profilePS5129426.46280134IPR017930Myb domain
SMARTSM007171.4E-1784132IPR001005SANT/Myb domain
PfamPF002491.9E-1685128IPR001005SANT/Myb domain
CDDcd001675.16E-1387128No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2787132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MMSNWSCSSI NRAVVESGRA PPPKGANQGL KKGPWTVAED AILIEYVKKH GEGNWNSVQK  60
NCGLMRCGKS CRLRWANHLR PNLKKGSFTP EEEQIIIELH AKHGNKWARM ASQLPGRTDN  120
EIKNYWNTRM KRHQRAGLPI YPQDFQAKTA AFRFHHQQDD RRAQPNSTSL SSTPYNLCFS  180
LLDPINRFAT PLNPLQNQLS PIGFYPNPSH QLKLFANTNS NDGCLPLSFP PVSSYQQSPL  240
STNLFRQNPT RKAVPINTPP SALIYNDVDM ETNMSFTSLI MGDQVQPIGY IPGLTPELPS  300
DQAPPGPTTS RGGACFEEAS NKSNNNDYSN SETSQQGMPG NMNNSGLLDA LLQEAKTVSF  360
RGKPCSDDFL LASNEGKRAM DSSVEEEGVE EEATKRVKLL LRNGSEYSCG EKLWDDLSSS  420
QSSNIWTKPS EEAVDQELNS MDDDIISLLN NFPSSEPLPE WYRQSRNERN SNRQSYGGIN  480
IVDDNRDPRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29301325106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2567s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301620.20.0transcription factor MYB101
TrEMBLA0A2K2BMY50.0A0A2K2BMY5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.17e-81myb domain protein 101