PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2538s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 375aa    MW: 40738.8 Da    PI: 4.2121
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2538s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.51e-141560649
                            HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEE CS
                  SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyey 49
                              +r+vtf+kRr+g++ KA  L+  Cda++a+++ s  s+ k+y++
  SapurV1A.2538s0010.1.p 15 AEQRSVTFTKRRQGLFNKAADLCRICDAQIAIMVSStgSKEKVYTF 60
                            568****************************999652278899998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-18163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.657262IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-8424IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-18580IPR002100Transcription factor, MADS-box
PfamPF003194.6E-141560IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-82439IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-83960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRTRKIPMA KRETAEQRSV TFTKRRQGLF NKAADLCRIC DAQIAIMVSS TGSKEKVYTF  60
GHSSVDAVFD RFLEDFPAAR EAVAYEAGIK SASNSLYEEI KALEGDVNTL MQNKKRNVGG  120
ISWDSLEEIE QSCNSVQELQ DVVDSLESLL VQARNKLLNN ATGSLGISNV VEPKTGDFFA  180
SELKPHHDSK SSLGEDQVGQ NSAIVGYNGA NYSDSHWNAD GSTTGIGMDF PVEVDVDLIW  240
NLLESSNFSS GSNKVFSKNN SGDCTSSGTA SGSASSSQEN EDIVLPTTDL DSELFMDMDL  300
VDCGTYNTTT DPGSGNINQH YAMDDGDCYA KQHDSATDYG LMDMIGYCLN DQLGLPLLTA  360
GANQFEDWTK YYQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2538s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382089.20.0LOW QUALITY PROTEIN: MADS-box transcription factor 47
TrEMBLA0A2K2A8H00.0A0A2K2A8H0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s11190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14582714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-18AGAMOUS-like 62