PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2454s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 455aa    MW: 49381.6 Da    PI: 5.5479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2454s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS178.74.3e-5529445574246
                    GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                             + ++  +++     sP++kf+h+taNqaI ea+e+ee vH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e+++e
  SapurV1A.2454s0030.1.p 294 TFTTKRSTSSSKAFSPYVKFAHFTANQAIFEAFETEELVHVIDLDILQGYQWPAIMQALAARPGGAPFLRITGVGS----SMENVKE 376
                             222333344466789*************************************************************....******* PP

                    GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                             tg+ La++A++l+vp+e+++ va++l dl++++++ + gEalaVn+v +lhr++    +l     ++L ++++  P++v+vveqea
  SapurV1A.2454s0030.1.p 377 TGRCLAELAHSLHVPLEYHP-VAEELVDLKPHMFNRRVGEALAVNSVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTVVEQEA 455
                             ********************.7*******************************9..44444....5******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.744192455IPR005202Transcription factor GRAS
PfamPF035141.5E-52294455IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MHSSSNKVPP ASPNESSSIT ESKKTILSSE FEQNSLTPPS LNLPPELSIT TNSSYNYNYA  60
RAMHGQSLSG CSPPRYLSQL GAAFSSIHKG KGQSPPHRMC NSPNNQFMQV ESLSLQGIED  120
FLDDFQRDGY GGGYQQPPKM SGSGGSSTQL FDISTTVPAM LDCLTIQNPS RFCTGSVSET  180
SSGSLATQES DIYQMGSVGT APSSQKLLQE NQQEQQQQVQ PLPLPATPPQ PPPTTQSLQQ  240
QPQSLNHTLM VSLPLGSEQE QVSGLQLLNL LLACAEAISI LFVCFCVTKT NTETFTTKRS  300
TSSSKAFSPY VKFAHFTANQ AIFEAFETEE LVHVIDLDIL QGYQWPAIMQ ALAARPGGAP  360
FLRITGVGSS MENVKETGRC LAELAHSLHV PLEYHPVAEE LVDLKPHMFN RRVGEALAVN  420
SVNRLHRVPG NCLGNLLAMI RDQAPNIVTV VEQEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-39306454104252Protein SCARECROW
5b3h_A9e-39306454103251Protein SCARECROW
5b3h_D9e-39306454103251Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2454s0030.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298647.10.0scarecrow-like protein 21
RefseqXP_024438917.10.0scarecrow-like protein 21
RefseqXP_024438924.10.0scarecrow-like protein 21
SwissprotG7L1661e-137RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB9GF630.0B9GF63_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-40RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]