![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.2394s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | LFY | ||||||||
Protein Properties | Length: 376aa MW: 42471.1 Da PI: 8.2045 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 620.5 | 2.9e-189 | 1 | 360 | 1 | 385 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeeld 87 mdpeaf+aslfkwd+ra++ + p+rlle a +++p +aa a+ r+l +leelf+ayG+ry+t+akiaelGftv+tL+dmkdeeld SapurV1A.2394s0010.1.p 1 MDPEAFTASLFKWDTRAMV-PHPNRLLEMVAPPQQPPAAAFAVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEELD 86 9**************9766.77789998888888887888888888999************************************** PP FLO_LFY 88 dlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelv 174 ++m+sls+ifr+dllvGeryGikaavraerrrl+ee+ +rr+lls d+ ++ldalsqeg seepvq+ keaagsgg+g ++e+v SapurV1A.2394s0010.1.p 87 EMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDEED--PRRRQLLSGDT-NTLDALSQEGFSEEPVQQDKEAAGSGGRG--TWEAV 168 ***********************************88..99999999996.57***********************9998..99999 PP FLO_LFY 175 aaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCre 261 +a e +kk+ ++k ++++ d d d+e +g erqrehPfivtepgevargkknGLDYLf+LyeqCr+ SapurV1A.2394s0010.1.p 169 TAGE------RKKQ-P--GRKKGHRKV---VD------LDGDDE-HGGAICERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRD 236 9883......3333.1..222222221...11......122233.344467************************************ PP FLO_LFY 262 fLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaia 348 fL+qvq+iakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLde+asnalrrafkergenvGawrqacykplvaia SapurV1A.2394s0010.1.p 237 FLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVGAWRQACYKPLVAIA 323 *************************************************************************************** PP FLO_LFY 349 arqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 +rqgwdid++fnahprL+iWYvPtkLrqLC++er+ a SapurV1A.2394s0010.1.p 324 SRQGWDIDSIFNAHPRLAIWYVPTKLRQLCYAERNGA 360 **********************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 4.2E-203 | 1 | 360 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MDPEAFTASL FKWDTRAMVP HPNRLLEMVA PPQQPPAAAF AVRPRELCGL EELFQAYGIR 60 YYTAAKIAEL GFTVNTLLDM KDEELDEMMN SLSQIFRWDL LVGERYGIKA AVRAERRRLD 120 EEDPRRRQLL SGDTNTLDAL SQEGFSEEPV QQDKEAAGSG GRGTWEAVTA GERKKQPGRK 180 KGHRKVVDLD GDDEHGGAIC ERQREHPFIV TEPGEVARGK KNGLDYLFHL YEQCRDFLIQ 240 VQNIAKERGE KCPTKVTNQV FRYAKKAGAS YINKPKMRHY VHCYALHCLD EDASNALRRA 300 FKERGENVGA WRQACYKPLV AIASRQGWDI DSIFNAHPRL AIWYVPTKLR QLCYAERNGA 360 TASSSVSGTG VHLPF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-107 | 201 | 370 | 4 | 185 | PROTEIN LEAFY |
2vy2_A | 1e-107 | 201 | 370 | 4 | 185 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.2394s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY230817 | 0.0 | AY230817.1 Salix discolor leafy/floricaula mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040286.1 | 0.0 | PREDICTED: floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | Q84L92 | 0.0 | Q84L92_SALDS; Leafy/floricaula | ||||
STRING | POPTR_0015s11820.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-151 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.2394s0010.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|