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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2238s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20110.4 Da PI: 10.7528 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.9 | 4.2e-21 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++++ rqvtfskRr+g++KKA+EL +LC++++a+i+fs+ gk SapurV1A.2238s0010.1.p 11 VKDSNSRQVTFSKRRTGVFKKANELATLCAVQIAIIVFSPGGK 53 689999**********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.623 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-26 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGRRKIEIEM VKDSNSRQVT FSKRRTGVFK KANELATLCA VQIAIIVFSP GGKPFSFGHP 60 NVEFVAQRFL NRDKKPKVSI GSVVDSQQEA RLEKLNGQLS DALRKLHYER KRGEVLDKAM 120 KLKGSEPRLI GELNLDELQK LKGELEELRG KLRGSVTEME ASSSLLLLSK KPVREKHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2238s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305333.1 | 1e-106 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | B9H3Z4 | 1e-105 | B9H3Z4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s13600.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-37 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2238s0010.1.p |