PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2213s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 447aa MW: 49088.2 Da PI: 7.0109 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16 | 2.2e-05 | 341 | 375 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A+eYIk L SapurV1A.2213s0020.2.p 341 KMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 375 6778999999999998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.687 | 326 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.66E-6 | 336 | 380 | No hit | No description |
SuperFamily | SSF47459 | 1.13E-10 | 336 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-9 | 341 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MADEYTSTNW WDSSSSSRNK FDSTGSSSTA SGLNSLRSFA WPTEMADFKG RSSMETASVS 60 DSSAAFHDSQ KLQQGHDSSA DLHMMGLGLS SQAMDWNQAL FRGDKSESSF RSTLQDNLSS 120 STNYQQENGI GSSQAQWRER VFTGDSSMTE FKQMNRGFSI DQPQFSPHGN SGDSTVSCQG 180 LQSTFPMDSS SIYGTAATML QGLLISDNQA QHCSFENRPM SYGYGANYGI STNEFLPSLP 240 KGSQFFRNSP PKQLSHNQLQ FSNNTPFWNA SASAMNDVRP SCFPLMQPQF ATSNFDEKPK 300 NISEVRDSNI VVKKSGSETA TKRPRNETPS PLPSLKVRKV KMGDRITALQ QLVSPFGKTD 360 TASVLSEAIE YIKFLHEQVS VLSTPYMKSG APILHQQGSD KAKDLQGQKQ DLRSRGLCLV 420 PVSSTFPVTH ETAVDFWTPT FGGTYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2213s0020.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024445198.1 | 0.0 | transcription factor bHLH123 isoform X2 | ||||
Swissprot | Q8GXT3 | 9e-88 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A2K2CBQ9 | 0.0 | A0A2K2CBQ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s43950.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 4e-90 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2213s0020.2.p |
Publications ? help Back to Top | |||
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