PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2188s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 68aa MW: 7862.24 Da PI: 11.3501

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2188s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.4	1.1e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienks r vtfskRrng++KKA ELSvLCd+++a++ifss++klye+ss SapurV1A.2188s0030.1.p 9 KRIENKSSRLVTFSKRRNGLFKKARELSVLCDVQIALLIFSSRDKLYEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.688	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.3E-36	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-27	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MGRKTVELKR IENKSSRLVT FSKRRNGLFK KARELSVLCD VQIALLIFSS RDKLYEFSSV 60 DRNLIRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-18	1	61	1	61	MEF2C
5f28_B	1e-18	1	61	1	61	MEF2C
5f28_C	1e-18	1	61	1	61	MEF2C
5f28_D	1e-18	1	61	1	61	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269\|PubMed:15530395, ECO:0000269\|PubMed:25183521, ECO:0000269\|PubMed:7632923}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2188s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452986.1	1e-30	MADS-box protein FLOWERING LOCUS C
Refseq	XP_024452987.1	1e-30	MADS-box protein FLOWERING LOCUS C
Refseq	XP_024452988.1	1e-30	MADS-box protein FLOWERING LOCUS C
Swissprot	P29383	3e-25	AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBL	A0A3N7EWE5	1e-31	A0A3N7EWE5_POPTR; Uncharacterized protein
STRING	POPTR_0003s16840.1	3e-32	(Populus trichocarpa)
STRING	POPTR_0003s16870.1	3e-32	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	1e-27	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.2188s0030.1.p

Publications ? help Back to Top
Maejima K, et al. Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen. Plant Signal Behav, 2015. 10(8): p. e1042635 [PMID:26179462]