PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2172s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 444aa    MW: 49013.4 Da    PI: 6.2906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2172s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-08348388954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  SapurV1A.2172s0010.2.p 348 ARQRRERISDRIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 388
                             69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14344403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.43E-11345393No hitNo description
SMARTSM003539.1E-13345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-12347402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5348388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDSLGWDDDS QVLTNSSSLW RNQQHDSVDL GEDIFHQIQE LQKTQTSAPQ MNSNSERHQE  60
LKRLVANTML EKSSGAGAIC DWGDASAQEL YSSSLINKPY SVTCMTDFSM SGQPRINING  120
LQYSKAGIST GSLDQSLDCL LSATNSNTDT SVEDDGISMI FTDCRNLWSF APNSSAAVSS  180
GESENNSCNP RNKEKHFPVS ELDETVSHCS SDQHGKNRNC SKTKPVCAKR SNDDCSEMQL  240
GLKHPLFDIL QSGCSNEEGG FRLISDNPPK PKKPRSDKPP SSSNINFQQP SSSISSSVEE  300
PDPEAIAQMK EMIYRAAAFR PVNLSLEVAE KPKRKNVRIS TDPQTVAARQ RRERISDRIR  360
VLQRLVPGGS KMDTASMLDE AANYLKFLRS QVKALENLGQ KLDSVSCPQP LNIAFSSLPF  420
NHSFPLQNHF PFQNPNHIHP SQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348353RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2172s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465865.10.0transcription factor bHLH87
SwissprotQ8S3D22e-92BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A2K2C0880.0A0A2K2C088_POPTR; Uncharacterized protein
STRINGPOPTR_0001s19250.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]