PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2172s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 49013.4 Da PI: 6.2906 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25 | 3.4e-08 | 348 | 388 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L SapurV1A.2172s0010.1.p 348 ARQRRERISDRIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 388 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 339 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-14 | 344 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.43E-11 | 345 | 393 | No hit | No description |
SMART | SM00353 | 9.1E-13 | 345 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-12 | 347 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-5 | 348 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MDSLGWDDDS QVLTNSSSLW RNQQHDSVDL GEDIFHQIQE LQKTQTSAPQ MNSNSERHQE 60 LKRLVANTML EKSSGAGAIC DWGDASAQEL YSSSLINKPY SVTCMTDFSM SGQPRINING 120 LQYSKAGIST GSLDQSLDCL LSATNSNTDT SVEDDGISMI FTDCRNLWSF APNSSAAVSS 180 GESENNSCNP RNKEKHFPVS ELDETVSHCS SDQHGKNRNC SKTKPVCAKR SNDDCSEMQL 240 GLKHPLFDIL QSGCSNEEGG FRLISDNPPK PKKPRSDKPP SSSNINFQQP SSSISSSVEE 300 PDPEAIAQMK EMIYRAAAFR PVNLSLEVAE KPKRKNVRIS TDPQTVAARQ RRERISDRIR 360 VLQRLVPGGS KMDTASMLDE AANYLKFLRS QVKALENLGQ KLDSVSCPQP LNIAFSSLPF 420 NHSFPLQNHF PFQNPNHIHP SQS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 348 | 353 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2172s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465865.1 | 0.0 | transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 2e-92 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A2K2C088 | 0.0 | A0A2K2C088_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s19250.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4530 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 3e-76 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2172s0010.1.p |
Publications ? help Back to Top | |||
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