PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 528aa MW: 57868.9 Da PI: 8.9691

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2164s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.6e-06	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H SapurV1A.2164s0010.2.p 78 FICEICNKGFKRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	13.2	0.00026	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H r + SapurV1A.2164s0010.2.p 154 WKCEKCSKRYAVQSDWKAHSRIC 176 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.52E-8	77	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.3E-6	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	2.0E-5	78	100	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.866	78	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-5	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.52E-8	149	174	No hit	No description
SMART	SM00355	120	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MLKGLVMDEN ISNLTFASGE VSASSGSRIE TGALHPQHSF DSTNQPPPKK KKSFPGNPDP 60 DAEVIALSPN SLQTTNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEVKKKVYV 120 CPEVTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSRICGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAEESV RAMAVNPILS SQQPGSSASH LINLQAMSVK 240 REQDENQHLL NPRPEYSIPP WLVYPPIGEA GAGPPQIIPT SQLFPENFDQ SFLQHGNPST 300 NPTVLPPFQY SSTATPHMSA TALLQRAAQM GVTMSKPSQS PAAIPRPHQG HMSNQNPGFS 360 STLPATSTAS SGLFFSSREQ MGGEFGHGLV SLENKGSAVT SGIMEHLAAS DAGGGHSLEH 420 DMMSFLSSAS RFDGSSFDSE DFNGMLIPKR DGGNFQGILS KSTESQFRRT DHDVRTSTAG 480 SPRGGGSDGL TRDFLGLKAF PHKDWLDHIN PSTYGQRNQN LPPPWQG*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MLKGLVMDEN ISNLTFASGE VSASSGSRIE TGALHPQHSF DSTNQPPPKK KKSFPGNPDP  60
DAEVIALSPN SLQTTNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEVKKKVYV  120
CPEVTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSRICGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAEESV RAMAVNPILS SQQPGSSASH LINLQAMSVK  240
REQDENQHLL NPRPEYSIPP WLVYPPIGEA GAGPPQIIPT SQLFPENFDQ SFLQHGNPST  300
NPTVLPPFQY SSTATPHMSA TALLQRAAQM GVTMSKPSQS PAAIPRPHQG HMSNQNPGFS  360
STLPATSTAS SGLFFSSREQ MGGEFGHGLV SLENKGSAVT SGIMEHLAAS DAGGGHSLEH  420
DMMSFLSSAS RFDGSSFDSE DFNGMLIPKR DGGNFQGILS KSTESQFRRT DHDVRTSTAG  480
SPRGGGSDGL TRDFLGLKAF PHKDWLDHIN PSTYGQRNQN LPPPWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	150	216	3	69	Zinc finger protein JACKDAW
5b3h_F	3e-34	150	216	3	69	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2164s0010.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006371888.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-113	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	U5FFQ4	0.0	U5FFQ4_POPTR; Uncharacterized protein
STRING	POPTR_0018s05280.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-115	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	SapurV1A.2164s0010.2.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]