PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2163s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 619aa    MW: 70251.9 Da    PI: 7.5112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2163s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-17183229148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT eEd  l+++v+q+G + W+ +a++++ gR +kqc++rw+++l
  SapurV1A.2163s0040.1.p 183 KGQWTIEEDRTLIQLVEQYGVRKWSHVAQMLP-GRIGKQCRERWHNHL 229
                             799*****************************.*************97 PP
2Myb_DNA-binding53.94.3e-17235277145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             +  W+ +Ed+ l++a+ +lG++ W+ Ia++++ gRt++++k++w+
  SapurV1A.2163s0040.1.p 235 KETWSVDEDKVLIQAHSELGNR-WAEIAKRLP-GRTENSIKNHWN 277
                             578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.363178233IPR017930Myb domain
SuperFamilySSF466895.03E-31181276IPR009057Homeodomain-like
SMARTSM007172.9E-16182231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-27184236IPR009057Homeodomain-like
CDDcd001672.34E-14186229No hitNo description
PfamPF139218.8E-17186243No hitNo description
SMARTSM007176.2E-17234282IPR001005SANT/Myb domain
PROSITE profilePS5129421.43234284IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-21237282IPR009057Homeodomain-like
CDDcd001671.69E-12237280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MFLSDKPCMK GDCFPFDTPA SPSSKGFLQD FDHLDEDHDN QFHASGSASN PYFGVQTGSN  60
FDSFDAFPYG LSSDIHFYDY ECKPFGGNIN GDGPVNENLQ GGAAYLNLSS QRTSIDGIGS  120
NQGHVSLNFE EIKPVSFAVP DEVSCVGAAK NECKRKMGLN KTRALLPSAR KTWIGPKKNS  180
VAKGQWTIEE DRTLIQLVEQ YGVRKWSHVA QMLPGRIGKQ CRERWHNHLR PNIKKETWSV  240
DEDKVLIQAH SELGNRWAEI AKRLPGRTEN SIKNHWNATK RKQYSKRKCR PKYPKASLLQ  300
DYIKSLNLDS GIAGRGLGRC TAASTDIILG NDTKLKAPEL QPWDLVLFKD YDNGLVPNYS  360
FNEVPGFDIH DKIFKGGCST VDSILDELPY DHFVAHDRRL EMEVLNNTPF MGFEVKKEVD  420
LVEMISQNKM LVKFKGLVKE QKRWSFLVAD CVIQNSNLEC ESLRNKKMGK KSNDTKLKAP  480
ELQPWDLVLF KDYDNGLVPN YSFNEVPGFD IHDKIFKGGC STVDSILDEL PYDHFVAHDR  540
RLEMEVLNNT PFMGFEVKKE VDLVEMISQN KMLVKFKGLV KEQKRWSFLV ADCVIQNSNL  600
ECESLRNKKM GKKSEEML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-431832834104C-Myb DNA-Binding Domain
1msf_C2e-431832834104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2163s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028719.10.0PREDICTED: transcription factor MYB98-like
TrEMBLB9IES70.0B9IES7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-92myb domain protein 98