PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1988s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 249aa    MW: 28020.3 Da    PI: 6.3726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1988s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.5e-1176127255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             ++  +e+Er+RR+++ +  + Lr llP  +    ++K s ++   +Av+YIk+L+
  SapurV1A.1988s0010.1.p  76 KVDRKEIERQRRQQMSTLHASLRNLLPLdS---IKGKRSISDHMNEAVKYIKHLK 127
                             66779***********************55...********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-973131No hitNo description
SuperFamilySSF474591.18E-1174142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.79874126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-976142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-876126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001580132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MFPFQQSGDD FWPHISFNPY QEDIDQDQHL ILGQDSLHGI SNLTSSSVEE VLQGHTALAT  60
SNANDGNGNL GCEEKKVDRK EIERQRRQQM STLHASLRNL LPLDSIKGKR SISDHMNEAV  120
KYIKHLKSNI HELSVKRDRL KNLPNSSTSE QGTGISDHNL LDNVTVRHYL DGVEIVLTRG  180
PGEEGIRLSR VLESVLEEGF DVVRCTSTRK GQRHFTTIHC QASNLNYIDA DGLQRKLIDV  240
ISLPRFDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1988s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041652.11e-145PREDICTED: transcription factor bHLH118-like
TrEMBLB9ICZ51e-142B9ICZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0015s14050.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-31bHLH family protein