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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1971s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 702aa MW: 77285 Da PI: 5.94 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 312.9 | 7e-96 | 346 | 700 | 5 | 374 |
GRAS 5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 + ++Ae +++g+ aq +Larl+++ + p g+p qR a+yf+ AL+ l++ + + ++ n + ++ a+k fse+sPi SapurV1A.1971s0010.1.p 346 ICQAAELIETGNPVHAQGILARLNHQlSLPIGKPYQRTAFYFKDALQLLLHS------SNNSNLMDTACNLIFKIGAYKSFSEISPI 426 689*********************99788999*******************9......3333334444679**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 l+f+++t+Nq +lea+eg+er+Hi+Dfdi++G+QW++L+q+La +++g+psl+iT+++sp+s+++ el t+e+L+ fA+e+++pfe SapurV1A.1971s0010.1.p 427 LQFANFTCNQVLLEAFEGSERIHIVDFDIGYGGQWASLMQELALKAGGAPSLKITAFASPSSHDELELGFTQENLRIFASEMNMPFE 513 *************************************************************************************** PP GRAS 178 fnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 ++l ++l + + L ++++E++aVnl + ++ +++ +l+ vL++vk+lsPkvvv ++ +d+++ +F++++ +a++ SapurV1A.1971s0010.1.p 514 LEILSLESLGSG-SWPLppCTSEKEVTAVNLPIG--SFSNDPSTLPV----VLRFVKQLSPKVVVSLDRGCDRSDLPFAHHVNHAIQ 593 ***955555554.5666434555*********95..55556666666....************************************ PP GRAS 263 yysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 ys+l++sl ++++ + ++ +k+Er+l+++ i+++v +++ e+ Wr + ++GF p+++s+++++qa++l+++++++g SapurV1A.1971s0010.1.p 594 SYSTLLESLdAVNV--HPDALQKIERFLVQPGIEKLVLGRHRC----PERTPPWRTLFLQSGFIPLTFSNFTESQAEYLVQRTPVRG 674 *********55554..5578899***************99998....9999************************************ PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 ++ve+++ slvl+W++ Lvs+SaWr SapurV1A.1971s0010.1.p 675 FHVEKRQSSLVLCWQRMDLVSASAWR 700 *************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.168 | 316 | 680 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-93 | 346 | 700 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MKAMPLPSED FQGKGVFDFS SSTTSSPDSL HQYHRRWQNN NSKESCGFFV GGAEPTSVLD 60 TISRQSPPTS SSTLSSSQGG GGGGGASTDT TNDAAAAGGS IPCLDEKCGQ QLGMEDWESV 120 LPGSPSQEQS ILRLIMGDIE DPSAGLNKLL QSGSRSLEME HASGFGVVDQ VFGFDISHMS 180 SASANLVANN NSIDPSSIHG INLLPGLFQQ QQQQTAFNQD EKPQILNPGM ISNQNQHQFV 240 QNPAMLLPFS YSQLQEHHNS QHFSSPPPSK RLNSGPVGVN YVPKVFDSRP PELFLPRQHQ 300 QQQQNHQFQM LQQQQQQKQG MIMNQKMATD ELVNQQQLQQ ATINPICQAA ELIETGNPVH 360 AQGILARLNH QLSLPIGKPY QRTAFYFKDA LQLLLHSSNN SNLMDTACNL IFKIGAYKSF 420 SEISPILQFA NFTCNQVLLE AFEGSERIHI VDFDIGYGGQ WASLMQELAL KAGGAPSLKI 480 TAFASPSSHD ELELGFTQEN LRIFASEMNM PFELEILSLE SLGSGSWPLP PCTSEKEVTA 540 VNLPIGSFSN DPSTLPVVLR FVKQLSPKVV VSLDRGCDRS DLPFAHHVNH AIQSYSTLLE 600 SLDAVNVHPD ALQKIERFLV QPGIEKLVLG RHRCPERTPP WRTLFLQSGF IPLTFSNFTE 660 SQAEYLVQRT PVRGFHVEKR QSSLVLCWQR MDLVSASAWR C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-30 | 348 | 699 | 25 | 378 | Protein SCARECROW |
5b3h_A | 6e-30 | 348 | 699 | 24 | 377 | Protein SCARECROW |
5b3h_D | 6e-30 | 348 | 699 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1971s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC211804 | 0.0 | AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033489.1 | 0.0 | PREDICTED: scarecrow-like protein 22 isoform X1 | ||||
Refseq | XP_011033496.1 | 0.0 | PREDICTED: scarecrow-like protein 22 isoform X1 | ||||
Swissprot | O81316 | 1e-147 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A2K1XR63 | 0.0 | A0A2K1XR63_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s05910.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3183 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-138 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1971s0010.1.p |
Publications ? help Back to Top | |||
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