![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.1968s0080.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 38817.8 Da PI: 4.9474 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 5.9e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ l+d+ k +G g W+ I r+ g++R +k+c++rw +yl SapurV1A.1968s0080.2.p 14 KGAWTPVEDKMLLDYLKIHGEGKWSNIVRETGLKRGGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E++l+++ +k+lG++ W++Ia +++ gRt++++k++w++ SapurV1A.1968s0080.2.p 67 RGNFSGDEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-21 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.729 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.0E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.54E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.215 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.22E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MGRKTECSKD GLNKGAWTPV EDKMLLDYLK IHGEGKWSNI VRETGLKRGG KSCRLRWMNY 60 LRPDIKRGNF SGDEEDLIIR MHKLLGNRWS LIAGRLPGRT DNEIKNYWHT TIAKKARGKP 120 KVDRKQIEPG SPSGAASSLK NQSCIESQCT TGVVAATTTS QENSSQDHQL SVAMPQFTTS 180 NLQYGAASNF KNQSTIESQC TTEVAAAAST LQSTDTNLQY DMPKTYEFES SSKGLASGGE 240 DNSSDIMMYN DYMDDFSKIL DSDFTEFSGI HDIFSTDHHS NNTDAVNGDH HGVSSEGCKS 300 RETTEFPEKL LESDRWSGNT CGLADQGFDF MSLLSFLDST DDEWTADALD * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.1968s0080.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006371801.1 | 0.0 | myb-related protein 308 | ||||
TrEMBL | B9NA03 | 0.0 | B9NA03_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s03770.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 8e-55 | myb domain protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.1968s0080.2.p |