PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1951s0050.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 624aa    MW: 71774.1 Da    PI: 4.9645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1951s0050.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011304324222
                             EETTTTEEESSHHHHHHHHHH CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                              C  Cgk F++  + k+H ++
  SapurV1A.1951s0050.3.p 304 YCVVCGKKFKSEKQWKNHEQS 324
                             5*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.07E-22578IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.7E-23676IPR001623DnaJ domain
SMARTSM002716.8E-22769IPR001623DnaJ domain
PROSITE profilePS5007619.779877IPR001623DnaJ domain
CDDcd062571.12E-18866IPR001623DnaJ domain
PfamPF002262.0E-20974IPR001623DnaJ domain
PRINTSPR006252.4E-151028IPR001623DnaJ domain
PRINTSPR006252.4E-152843IPR001623DnaJ domain
PRINTSPR006252.4E-154969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576678.73E-14296344No hitNo description
SMARTSM004517.4E-5300334IPR003604Zinc finger, U1-type
PfamPF121713.3E-10303328IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280305327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MASNQLRCHY EVLGLSRDSS PEEIRSAYKK LALRRHPDKL VQSGLSQAEA TAQFQELVQA  60
YEVLSDPKER AWYDSHRSQI LFSDPNSGNS VPDSVIPNLF SFFSNTVYSG YTDSGRGFYK  120
VYSDVFEKIY SNEVNFCRKL GLGLDSVRDA PLIGNLQCDY AQVSAFYNYW LGFSTVMDFC  180
WVDKYDVMAG QNRKSRRVME EENKKLRKKA RREYNETVRG LGEFVKKRDK RVIDMLVKKN  240
AEMERKKEEE KERKKKLERE RMERLRAYEE PEWARVNEEE VDGMEGFEEE EDKGKKGNGR  300
KELYCVVCGK KFKSEKQWKN HEQSKKHKEK VAELRESFQD EDDEREDIEE DDLEKNEDVE  360
EIEERFKEDF IIQWEGNGAE VLDAYVNGID KNNGNVEDEE GEEMSVLEAM VSGHKSRKSR  420
GSRHMNEEFP QEVEDAKEEV EVMKYNNRKT RRRGKKVRGW NNGGEGVTSD IDESMSANEE  480
TNGCDDEQNE DAKEEVEVMK YNNQKTRRRG KKVRGWNNGG EGVTSEIDES MNANEETNGC  540
DDEQNEEPAS NSFVEDKNDS KIDDHLGKTG KKSNQSTKKK GAATKETNVK SKNSSKGKKG  600
KAISKDSGNA CDTCGVEFES RSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455RKTRRRGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1951s0050.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003861.10.0PREDICTED: dnaJ homolog subfamily C member 21
SwissprotQ9C9111e-178JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2C9VP090.0A0A2C9VP09_MANES; Uncharacterized protein
STRINGcassava4.1_003940m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-162DNAJ heat shock N-terminal domain-containing protein