 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.1902s0010.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
GRAS |
| Protein Properties |
Length: 296aa MW: 34381.6 Da PI: 10.0894 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.1902s0010.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 48 | 2.2e-15 | 28 | 138 | 15 | 138 |
GRAS 15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
++ a L+++ +++s gd+mqR++ayf+ +L arl+ + s y+ + ++ts +ee+ ++++ +a
SapurV1A.1902s0010.1.p 28 NNVGSALDNLKEVLQRVSLIGDSMQRVVAYFADGLVARLLTKKSPPYNMIMKEPTS----EEEF--------------LAFIEKYRA 96
5566778889999999*************************888888777666665....2332..............234555689 PP
GRAS 102 Ileavege.....ervHiiDfdisqGlQWpaLlqaLasRpeg 138
Ilea e++ +++H+iD+d+s +QW +L+q+L+++++
SapurV1A.1902s0010.1.p 97 ILEAYEKKeennkSALHVIDLDVSSFFQWSSLIQSLSEKDNR 138
9999998877776789*********************99875 PP
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| 2 | GRAS | 113.2 | 3.4e-35 | 141 | 292 | 173 | 332 |
GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
++ fef+ l l +l +Lrvk++E++aVn++++l +l +s+++++ +Lkl+ sl+P +vv+veqe +++s sFl rfle
SapurV1A.1902s0010.1.p 141 NLVFEFHGL----LRGSKLTNLRVKKNETVAVNSIFRLNTLK-DSLKISD----TLKLIHSLNPSIVVLVEQERSRSSRSFLSRFLE 218
7889***98....7777889******************9996.8888888....********************************* PP
GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsek 332
+l+y++a+fdsl+ lp +s er +v + l++ei++++ + + r ++e+W+ r+e GF+ ++ls+k
SapurV1A.1902s0010.1.p 219 CLHYFAAMFDSLDDFLPLKSLERFSVKKNHLRKEIKSILNYYKYDtNCPRYDKMETWKGRIEGHGFGGMRLSSK 292
***************************************9876664889**********************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MRRKSKRLRE DHVFNPLMNS YKGYDDKNNV GSALDNLKEV LQRVSLIGDS MQRVVAYFAD 60
GLVARLLTKK SPPYNMIMKE PTSEEEFLAF IEKYRAILEA YEKKEENNKS ALHVIDLDVS 120
SFFQWSSLIQ SLSEKDNRVR NLVFEFHGLL RGSKLTNLRV KKNETVAVNS IFRLNTLKDS 180
LKISDTLKLI HSLNPSIVVL VEQERSRSSR SFLSRFLECL HYFAAMFDSL DDFLPLKSLE 240
RFSVKKNHLR KEIKSILNYY KYDTNCPRYD KMETWKGRIE GHGFGGMRLS SKSLI*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213423 | 1e-165 | AC213423.1 Populus trichocarpa clone POP042-P09, complete sequence. |
