PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1902s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 296aa    MW: 34381.6 Da    PI: 10.0894
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1902s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS482.2e-152813815138
                    GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                             ++   a   L+++ +++s  gd+mqR++ayf+ +L arl+ + s  y+ +  ++ts    +ee+              ++++   +a
  SapurV1A.1902s0010.1.p  28 NNVGSALDNLKEVLQRVSLIGDSMQRVVAYFADGLVARLLTKKSPPYNMIMKEPTS----EEEF--------------LAFIEKYRA 96 
                             5566778889999999*************************888888777666665....2332..............234555689 PP

                    GRAS 102 Ileavege.....ervHiiDfdisqGlQWpaLlqaLasRpeg 138
                             Ilea e++     +++H+iD+d+s  +QW +L+q+L+++++ 
  SapurV1A.1902s0010.1.p  97 ILEAYEKKeennkSALHVIDLDVSSFFQWSSLIQSLSEKDNR 138
                             9999998877776789*********************99875 PP
2GRAS113.23.4e-35141292173332
                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             ++ fef+ l    l   +l +Lrvk++E++aVn++++l +l  +s+++++    +Lkl+ sl+P +vv+veqe +++s sFl rfle
  SapurV1A.1902s0010.1.p 141 NLVFEFHGL----LRGSKLTNLRVKKNETVAVNSIFRLNTLK-DSLKISD----TLKLIHSLNPSIVVLVEQERSRSSRSFLSRFLE 218
                             7889***98....7777889******************9996.8888888....********************************* PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsek 332
                             +l+y++a+fdsl+  lp +s er +v +  l++ei++++   + +    r  ++e+W+ r+e  GF+ ++ls+k
  SapurV1A.1902s0010.1.p 219 CLHYFAAMFDSLDDFLPLKSLERFSVKKNHLRKEIKSILNYYKYDtNCPRYDKMETWKGRIEGHGFGGMRLSSK 292
                             ***************************************9876664889**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.8761295IPR005202Transcription factor GRAS
PfamPF035147.5E-1328138IPR005202Transcription factor GRAS
PfamPF035141.2E-32141292IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MRRKSKRLRE DHVFNPLMNS YKGYDDKNNV GSALDNLKEV LQRVSLIGDS MQRVVAYFAD  60
GLVARLLTKK SPPYNMIMKE PTSEEEFLAF IEKYRAILEA YEKKEENNKS ALHVIDLDVS  120
SFFQWSSLIQ SLSEKDNRVR NLVFEFHGLL RGSKLTNLRV KKNETVAVNS IFRLNTLKDS  180
LKISDTLKLI HSLNPSIVVL VEQERSRSSR SFLSRFLECL HYFAAMFDSL DDFLPLKSLE  240
RFSVKKNHLR KEIKSILNYY KYDTNCPRYD KMETWKGRIE GHGFGGMRLS SKSLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-223729342338Protein SCARECROW
5b3h_A2e-223729341337Protein SCARECROW
5b3h_D2e-223729341337Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1902s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134231e-165AC213423.1 Populus trichocarpa clone POP042-P09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376315.11e-148scarecrow-like protein 21
TrEMBLB9MW611e-147B9MW61_POPTR; GRAS family protein
STRINGPOPTR_0013s11930.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.15e-26SCARECROW-like 1