PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1898s0040.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 386aa MW: 42208.6 Da PI: 7.383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1898s0040.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00046	351	374	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L+el P+ SapurV1A.1898s0040.4.p 351 SIAERVRRTRISERMRKLQELFPN 374 689******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.248	345	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MSLLYSFNSS DGELRKSQEF MDLNPYHYHQ QQQQQQNQQN SGPKSYRSAP SSFLESLVKG 60 TSGHGGGNGG VGSEDYRYLR SPSPEMDTML KRFMSSCNGS GDSSSQDLQE FEERPPVRQE 120 QEDSEMVYQS LPGHHNLVND NSVSVGNSLD SAFSVMNPMD LENSMQATKM STGNGSNLIR 180 QNSSPAGILS SLGADNGFAV MRDAGSFRAG KGTNGGATPS TSRIRSHADF SSGHRMLPQI 240 TEIGEECIGG SSPEVDFSKR KHMYKINVDT WGDASVSSLT RSRDSGGNMF SGLNSLDSQV 300 GNSGNRMTGS THHLPKTVSE MATAEKFLDF QGNFVPCKTR AKRGFATHPR SIAERVRRTR 360 ISERMRKLQE LFPNIDKVVL TLDTL*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MSLLYSFNSS DGELRKSQEF MDLNPYHYHQ QQQQQQNQQN SGPKSYRSAP SSFLESLVKG  60
TSGHGGGNGG VGSEDYRYLR SPSPEMDTML KRFMSSCNGS GDSSSQDLQE FEERPPVRQE  120
QEDSEMVYQS LPGHHNLVND NSVSVGNSLD SAFSVMNPMD LENSMQATKM STGNGSNLIR  180
QNSSPAGILS SLGADNGFAV MRDAGSFRAG KGTNGGATPS TSRIRSHADF SSGHRMLPQI  240
TEIGEECIGG SSPEVDFSKR KHMYKINVDT WGDASVSSLT RSRDSGGNMF SGLNSLDSQV  300
GNSGNRMTGS THHLPKTVSE MATAEKFLDF QGNFVPCKTR AKRGFATHPR SIAERVRRTR  360
ISERMRKLQE LFPNIDKVVL TLDTL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1898s0040.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298446.1	0.0	transcription factor bHLH130
Refseq	XP_024441264.1	0.0	transcription factor bHLH130
TrEMBL	B9GFQ9	0.0	B9GFQ9_POPTR; Uncharacterized protein
STRING	POPTR_0001s27680.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1898s0040.4.p