PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1898s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 422aa    MW: 46207.1 Da    PI: 8.465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1898s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09351396655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L+el P+     +k  s a+ L +Ave+Ik+Lq
  SapurV1A.1898s0040.1.p 351 SIAERVRRTRISERMRKLQELFPNI----DKQTSTADKLDLAVEHIKDLQ 396
                             689*********************5....588*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.681345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-14348408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.56E-10349400No hitNo description
Gene3DG3DSA:4.10.280.101.8E-11350409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6351396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-8351401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSLLYSFNSS DGELRKSQEF MDLNPYHYHQ QQQQQQNQQN SGPKSYRSAP SSFLESLVKG  60
TSGHGGGNGG VGSEDYRYLR SPSPEMDTML KRFMSSCNGS GDSSSQDLQE FEERPPVRQE  120
QEDSEMVYQS LPGHHNLVND NSVSVGNSLD SAFSVMNPMD LENSMQATKM STGNGSNLIR  180
QNSSPAGILS SLGADNGFAV MRDAGSFRAG KGTNGGATPS TSRIRSHADF SSGHRMLPQI  240
TEIGEECIGG SSPEVDFSKR KHMYKINVDT WGDASVSSLT RSRDSGGNMF SGLNSLDSQV  300
GNSGNRMTGS THHLPKTVSE MATAEKFLDF QGNFVPCKTR AKRGFATHPR SIAERVRRTR  360
ISERMRKLQE LFPNIDKQTS TADKLDLAVE HIKDLQKQVK TLTDTKAKCT CSRKQYSSTS  420
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1898s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298446.10.0transcription factor bHLH130
RefseqXP_024441264.10.0transcription factor bHLH130
TrEMBLB9GFQ90.0B9GFQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s27680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-58bHLH family protein