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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1897s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 491aa MW: 54971.1 Da PI: 6.7845 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.7e-16 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ + g+ R++k+c++rw ++l SapurV1A.1897s0070.1.p 32 KGPWTVAEDAILIEYVKKHGEGNWNSVQKNCGLMRCGKSCRLRWANHL 79 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+++++++++++G++ W++ a+ ++ gRt++++k++w++ SapurV1A.1897s0070.1.p 85 KGSFTPEEEQIIIELHAKHGNK-WARMASQLP-GRTDNEIKNYWNT 128 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.528 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 29 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-13 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 32 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.23E-11 | 34 | 79 | No hit | No description |
PROSITE profile | PS51294 | 26.462 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-17 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 85 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.16E-13 | 87 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-27 | 87 | 132 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MMSNWSCSSI NRAVVESGRA PPPKGANQGL KKGPWTVAED AILIEYVKKH GEGNWNSVQK 60 NCGLMRCGKS CRLRWANHLR PNLKKGSFTP EEEQIIIELH AKHGNKWARM ASQLPGRTDN 120 EIKNYWNTRM KRHQRAGLPI YPQDFQAKTA AFRFHHQQED RRTQPNSTSL SSTPYNLCFS 180 LLDPINRFAT PLNPFQNHLS PLAFYPNPSH QLKLFANTNS NDGCLPLSFP PVSSYQQSPL 240 STNLFRQNPA RKAVPTNTPP SALIYNDVDM ETNMSFTSLI MGDQVQPIGY IPGLTPEQPS 300 DQTPPGPTTS RGGACFEEEA NKSNNNDYSN SETSQQGMPG NMNNSGLLDA LLQEAKTVSF 360 RGKPSSDDFL LASIEGKRAM DSSVEEEAVE EEATKRVKLL LRNGSEYSCG EKLWDDLSSS 420 QSSNIWTKPS EEAVDQELNS MDDDIISLLN NFPSSEPLPE WYRQSRNERN SNRQSYGGIN 480 IVDDNRDPRR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 30 | 132 | 5 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1897s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301620.2 | 0.0 | transcription factor MYB101 | ||||
TrEMBL | A0A2K2BMY5 | 0.0 | A0A2K2BMY5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s21300.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9949 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 2e-79 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1897s0070.1.p |