PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1836s0050.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | E2F/DP | ||||||||
Protein Properties | Length: 433aa MW: 48456.6 Da PI: 5.2364 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.3 | 2.3e-27 | 148 | 213 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg SapurV1A.1836s0050.4.p 148 RYDSSLGLLTKKFINLIKHAEDGVLDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 213 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 6.2E-35 | 148 | 213 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.08E-17 | 148 | 211 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.3E-28 | 148 | 215 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.1E-24 | 150 | 213 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 2.60E-43 | 225 | 331 | No hit | No description |
SuperFamily | SSF144074 | 8.63E-31 | 227 | 331 | No hit | No description |
Pfam | PF16421 | 1.1E-31 | 230 | 329 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MSNLQAPNNQ TMKQPQQNSM QSHAPNQRQQ FPFSSMEPQF LPPGDYHRFG VGQRRHVADH 60 EAEGIVAKPP TLKRKSDAAG HQGESSEWSA GHGYMELVTT PLQTPVSGKG GKTPKTLRLS 120 KSSKSASQSA AGALGTPGNN VTPTGPIRYD SSLGLLTKKF INLIKHAEDG VLDLNKAADT 180 LEVQKRRIYD ITNVLEGIGL IEKKLKNRIQ WKGLDVSRSG EGDDNNVATL QAEVENLTIE 240 EQKLDEQTRE MQERLSDLSE DEKNQKWLFV TKEDIKILPG FQNETLIAIK APHGTTLEVP 300 DPDEAVDYPQ RRYRIVFRST MGPIDVYLVS QFEEKFEDIQ EESRAKEIEM QEQNGHRMCS 360 ELNTSHDFVN GIMKIVPSDV NSDADYWLLS DADVSITDMW SNEGILANIL HCIYLICVLM 420 LLKVDQQKLS FP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 2e-26 | 143 | 214 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1836s0050.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY179506 | 0.0 | AY179506.1 Populus alba E2F mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312830.1 | 0.0 | transcription factor E2FB | ||||
Swissprot | Q9FV71 | 1e-143 | E2FB_ARATH; Transcription factor E2FB | ||||
TrEMBL | B9HQ23 | 0.0 | B9HQ23_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s16350.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 1e-140 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1836s0050.4.p |
Publications ? help Back to Top | |||
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