PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1807s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 183aa    MW: 20898.5 Da    PI: 9.573
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1807s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-181360148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W+++Ed++l+d+++++G g+W++ ++  g+ R++k+c++rw++yl
  SapurV1A.1807s0010.1.p 13 KGAWSQQEDQKLIDYIQKHGEGCWRSLPQAAGLLRCGKSCRLRWRNYL 60
                            79******************************99*************7 PP
2Myb_DNA-binding491.4e-1568110347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  SapurV1A.1807s0010.1.p  68 GFGEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                             5789****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-24462IPR009057Homeodomain-like
PROSITE profilePS5129416.686860IPR017930Myb domain
SuperFamilySSF466891.12E-2811107IPR009057Homeodomain-like
SMARTSM007174.1E-141262IPR001005SANT/Myb domain
PfamPF002496.4E-171360IPR001005SANT/Myb domain
CDDcd001676.37E-111560No hitNo description
PROSITE profilePS5129423.22861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2363115IPR009057Homeodomain-like
SMARTSM007173.4E-1465113IPR001005SANT/Myb domain
PfamPF002493.3E-1469110IPR001005SANT/Myb domain
CDDcd001672.08E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRKPCCDKQH TNKGAWSQQE DQKLIDYIQK HGEGCWRSLP QAAGLLRCGK SCRLRWRNYL  60
RPDLKRDGFG EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLESHRH  120
VGFTRLRAEI PAARSKNQAN DPETFIDFNG GKLEPTSKSS SGINLDLTLS IPSKNFESSD  180
EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291211526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1807s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000470.11e-116PREDICTED: myb-related protein 308-like
RefseqXP_011000471.11e-116PREDICTED: myb-related protein 308-like
RefseqXP_011012518.11e-116PREDICTED: myb-related protein 308-like
RefseqXP_011012519.11e-116PREDICTED: myb-related protein 308-like
SwissprotQ388513e-67MYB6_ARATH; Transcription repressor MYB6
TrEMBLB9IEA01e-114B9IEA0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s04300.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-69myb domain protein 6