PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1746s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 208aa    MW: 24038.1 Da    PI: 8.975
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1746s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.1746s0010.1.p 14 KGPWTPEEDKILVSYIQSYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding59.86.1e-1967112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+++ eE+e +v+++++lG++ W+tIa++++ gRt++++k++w+++l
  SapurV1A.1746s0010.1.p  67 RGNFSNEEEETIVKLHQMLGNR-WSTIAARLP-GRTDNEIKNYWHSHL 112
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.04961IPR017930Myb domain
SuperFamilySSF466891.32E-3110108IPR009057Homeodomain-like
SMARTSM007173.7E-141363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
CDDcd001679.71E-111661No hitNo description
PROSITE profilePS5129425.65962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2765115IPR009057Homeodomain-like
SMARTSM007177.2E-1766114IPR001005SANT/Myb domain
PfamPF002499.3E-1767112IPR001005SANT/Myb domain
CDDcd001673.36E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGRAPCCEMM GLKKGPWTPE EDKILVSYIQ SYGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SNEEEETIVK LHQMLGNRWS TIAARLPGRT DNEIKNYWHS HLKKRFQQDR  120
GNPVEHRRKT PRNAIVDNTS SSQLENFEVH QSKCHSPSDK APIFQEASSQ EIFNGFDGKN  180
DMEEFWYELL VKAGNSREVL ESWGQFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
1h8a_C7e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1746s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447113.11e-130transcription factor MYB4
SwissprotQ7XBH46e-74MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A3N7G7Y51e-129A0A3N7G7Y5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s03490.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-73myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]